{ "type": "genome", "identifier": "GCF_009763355.1", "organism": "Massilia cellulosiltytica", "title": "Massilia cellulosiltytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "college of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009763355.1", "bioproject": "PRJNA224116", "biosample": "SAMN13495592", "wgs_master": "WSES00000000.1", "refseq_category": "reference genome", "taxid": "2683234", "species_taxid": "2683234", "organism_name": "Massilia cellulosiltytica", "infraspecific_name": "strain=NEAU-DD11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/18", "asm_name": "ASM976335v1", "asm_submitter": "college of life science", "gbrs_paired_asm": "GCA_009763355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/763/355/GCF_009763355.1_ASM976335v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7341321", "genome_size_ungapped": "7341311", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009763355.1-RS_2024_08_25", "annotation_date": "2024-08-25", "total_gene_count": "6485", "protein_coding_gene_count": "6351", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-18", "dateModified": "2019-12-18", "datePublished": "2019-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia cellulosiltytica" ], "sample_taxid": [ "2683234" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Harbin" ], "sample_host_location_id": [], "data_size": "2.002 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7341321", "Number of Sequences": "29", "Longest Sequences (bp)": "1056032", "N50 (bp)": "705160", "Gap Ratio (%)": "0.000136", "GCcontent (%)": "66.2", "Number of CDSs": "6379", "Average Protein Length": "351.7", "Coding Ratio (%)": "91.7", "Number of rRNAs": "0", "Number of tRNAs": "86", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia putida", "strain": "strain=6NM-7", "accession": "GCA_001941825.1", "taxid": 1141883, "species_taxid": 1141883, "relation_to_type": "type", "validated": true, "ani": 89.9796, "matched_fragments": 1770, "total_fragments": 2432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia rhizosphaerae", "strain": "strain=NEAU-GH312", "accession": "GCA_016093545.1", "taxid": 2784389, "species_taxid": 2784389, "relation_to_type": "type", "validated": true, "ani": 89.4659, "matched_fragments": 1787, "total_fragments": 2432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia pinisoli", "strain": "strain=JCM 31316", "accession": "GCA_024753285.1", "taxid": 1772194, "species_taxid": 1772194, "relation_to_type": "type", "validated": true, "ani": 89.0661, "matched_fragments": 1721, "total_fragments": 2432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 83.955, "matched_fragments": 1366, "total_fragments": 2432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 83.5265, "matched_fragments": 1427, "total_fragments": 2432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 82.1433, "matched_fragments": 1205, "total_fragments": 2432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia alkalitolerans", "strain": "strain=DSM 17462", "accession": "GCA_000427785.1", "taxid": 286638, "species_taxid": 286638, "relation_to_type": "type", "validated": true, "ani": 81.8595, "matched_fragments": 1184, "total_fragments": 2432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Massilia", "cellulosiltytica" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }