{ "type": "genome", "identifier": "GCF_009764355.1", "organism": "Companilactobacillus bobalius", "title": "Companilactobacillus bobalius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universitat de Valencia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009764355.1", "bioproject": "PRJNA224116", "biosample": "SAMN04288429", "wgs_master": "LNUA00000000.1", "refseq_category": "na", "taxid": "2801451", "species_taxid": "2801451", "organism_name": "Companilactobacillus bobalius", "infraspecific_name": "strain=203", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/18", "asm_name": "ASM976435v1", "asm_submitter": "Universitat de Valencia", "gbrs_paired_asm": "GCA_009764355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/764/355/GCF_009764355.1_ASM976435v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3699578", "genome_size_ungapped": "3699578", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-18", "total_gene_count": "3756", "protein_coding_gene_count": "3514", "non_coding_gene_count": "119", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-18", "dateModified": "2019-12-18", "datePublished": "2019-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Companilactobacillus bobalius" ], "sample_taxid": [ "2801451" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"status": "below_threshold" }, { "organism_name": "Companilactobacillus paralimentarius", "strain": "strain=DSM 13238", "accession": "GCA_009764345.1", "taxid": 83526, "species_taxid": 83526, "relation_to_type": "type", "validated": true, "ani": 91.4394, "matched_fragments": 719, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus mishanensis", "strain": "strain=256-3", "accession": "GCA_003946505.1", "taxid": 2486008, "species_taxid": 2486008, "relation_to_type": "type", "validated": true, "ani": 79.8213, "matched_fragments": 184, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus allii", "strain": "strain=WiKim39", "accession": "GCA_023923085.1", "taxid": 1847728, "species_taxid": 1847728, "relation_to_type": "type", "validated": true, "ani": 79.7534, "matched_fragments": 280, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009764355.1", "gtdb_species": "s__Companilactobacillus paralimentarius_A", "ani": 100.0, "matched_fragments": 1073, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_001435445.1", "gtdb_species": "s__Companilactobacillus kimchii", "ani": 92.1884, "matched_fragments": 793, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", 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"mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005405305.1", "gtdb_species": "s__Companilactobacillus formosensis", "ani": 81.9252, "matched_fragments": 426, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001435815.1", "gtdb_species": "s__Companilactobacillus nantensis", "ani": 81.6207, "matched_fragments": 449, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Companilactobacillus", "bobalius" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }