{ "type": "genome", "identifier": "GCF_009765165.1", "organism": "Lysobacter panacisoli", "title": "Lysobacter panacisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009765165.1", "bioproject": "PRJNA224116", "biosample": "SAMN12282957", "wgs_master": "VLNU00000000.1", "refseq_category": "reference genome", "taxid": "1255263", "species_taxid": "1255263", "organism_name": "Lysobacter panacisoli", "infraspecific_name": "strain=JCM 19212", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/18", "asm_name": "ASM976516v1", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_009765165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/765/165/GCF_009765165.1_ASM976516v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3879713", "genome_size_ungapped": "3879703", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009765165.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3629", "protein_coding_gene_count": "3538", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-18", "dateModified": "2019-12-18", "datePublished": "2019-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter panacisoli" ], "sample_taxid": [ "1255263" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.048 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3879713", "Number of Sequences": "2", "Longest Sequences (bp)": "3731398", "N50 (bp)": "3731398", "Gap Ratio (%)": "0.000258", "GCcontent (%)": "67.5", "Number of CDSs": "3605", "Average Protein Length": "325.0", "Coding Ratio (%)": "90.6", "Number of rRNAs": "6", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1291, "total_fragments": 1292, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 86.0361, "matched_fragments": 995, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 84.9639, "matched_fragments": 929, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 84.5797, "matched_fragments": 927, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium 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"accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 83.0403, "matched_fragments": 802, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 82.3384, "matched_fragments": 641, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 82.1453, "matched_fragments": 832, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016735495.2", "gtdb_species": "s__Lysobacter sp016735495", "ani": 86.4088, "matched_fragments": 1047, "total_fragments": 1292, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017308985.1", "gtdb_species": "s__Lysobacter sp017308985", "ani": 86.2909, "matched_fragments": 1028, "total_fragments": 1292, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003382285.1", "gtdb_species": "s__Lysobacter soli", "ani": 86.0494, "matched_fragments": 994, "total_fragments": 1292, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "96.81", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_005503055.1", "gtdb_species": "s__Lysobacter sp005503055", "ani": 85.8624, "matched_fragments": 1002, "total_fragments": 1292, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016613475.2", "gtdb_species": "s__Lysobacter arenosi", "ani": 84.9482, "matched_fragments": 930, "total_fragments": 1292, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.352, "cell_length": 0.341, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 28.882, "optimum_ph": 7.253, "genome_size": 4192346.458, "gc_content": 68.113, "coding_genes": 4691.193, "rRNA16S_genes": 2.166, "tRNA_genes": 53.666, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.411, "range_salinity": null, "facultative_respiration": 0.117, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.882, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.882, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.058, "vibrio_cell_shape": 0.058, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysobacter", "panacisoli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }