{ "type": "genome", "identifier": "GCF_009765355.1", "organism": "Amycolatopsis anabasis", "title": "Amycolatopsis anabasis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Liaoning Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009765355.1", "bioproject": "PRJNA224116", "biosample": "SAMN12612889", "wgs_master": "VTHK00000000.1", "refseq_category": "reference genome", "taxid": "1840409", "species_taxid": "1840409", "organism_name": "Amycolatopsis anabasis", "infraspecific_name": "strain=EGI 650086", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/18", "asm_name": "ASM976535v1", "asm_submitter": "Liaoning Normal University", "gbrs_paired_asm": "GCA_009765355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/765/355/GCF_009765355.1_ASM976535v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10940472", "genome_size_ungapped": "10940192", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "191", "contig_count": "191", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009765355.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "10214", "protein_coding_gene_count": "9998", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-18", "dateModified": "2019-12-18", "datePublished": "2019-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis anabasis" ], "sample_taxid": [ "1840409" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.959 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10940472", "Number of Sequences": "191", "Longest Sequences (bp)": "442825", "N50 (bp)": "157787", "Gap Ratio (%)": "0.002559", "GCcontent (%)": "70.1", "Number of CDSs": "10241", "Average Protein Length": "316.3", "Coding Ratio (%)": "88.8", "Number of rRNAs": "0", "Number of tRNAs": "89", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3549, 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"Amycolatopsis acididurans", "strain": "strain=K13G38", "accession": "GCA_012328925.1", "taxid": 2724524, "species_taxid": 2724524, "relation_to_type": "type", "validated": true, "ani": 80.3339, "matched_fragments": 1149, "total_fragments": 3556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.2758, "matched_fragments": 1266, "total_fragments": 3556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.2372, "matched_fragments": 1285, "total_fragments": 3556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis rhizosphaerae", "strain": "strain=TBRC 6029", "accession": "GCA_007713715.1", "taxid": 2053003, "species_taxid": 2053003, "relation_to_type": "type", "validated": true, "ani": 80.2255, "matched_fragments": 990, "total_fragments": 3556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sacchari", "strain": "strain=DSM 44468", "accession": "GCA_900114035.1", "taxid": 115433, "species_taxid": 115433, "relation_to_type": "type", "validated": true, "ani": 80.1917, "matched_fragments": 1214, "total_fragments": 3556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermoflava", "strain": "strain=N1165", "accession": "GCA_000473265.1", "taxid": 84480, "species_taxid": 84480, "relation_to_type": "type", "validated": true, "ani": 80.1858, "matched_fragments": 1353, "total_fragments": 3556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, 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