{ "type": "genome", "identifier": "GCF_009769385.1", "organism": "Saccharothrix deserti", "title": "Saccharothrix deserti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu normal university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009769385.1", "bioproject": "PRJNA224116", "biosample": "SAMN12229421", "wgs_master": "VKAB00000000.1", "refseq_category": "reference genome", "taxid": "2593674", "species_taxid": "2593674", "organism_name": "Saccharothrix deserti", "infraspecific_name": "strain=BMP B8144", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/18", "asm_name": "ASM976938v1", "asm_submitter": "Jiangsu normal university", "gbrs_paired_asm": "GCA_009769385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/385/GCF_009769385.1_ASM976938v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10832261", "genome_size_ungapped": "10832151", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "162", "contig_count": "173", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009769385.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "10101", "protein_coding_gene_count": "9769", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-18", "dateModified": "2019-12-18", "datePublished": "2019-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharothrix deserti" ], "sample_taxid": [ "2593674" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "2.908 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10832261", "Number of Sequences": "162", "Longest Sequences (bp)": "660958", "N50 (bp)": "316706", "Gap Ratio (%)": "0.001015", "GCcontent (%)": "70.4", "Number of CDSs": "10071", "Average Protein Length": "317.9", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "96", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharothrix deserti", "strain": "strain=BMP B8144", "accession": "GCA_009769385.1", "taxid": 2593674, "species_taxid": 2593674, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3506, "total_fragments": 3532, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharothrix ecbatanensis", "strain": "strain=DSM 45486", "accession": "GCA_014205015.1", "taxid": 1105145, "species_taxid": 1105145, "relation_to_type": "type", "validated": true, "ani": 88.5592, "matched_fragments": 2117, "total_fragments": 3532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix carnea", "strain": "strain=CGMCC 4.7097", "accession": "GCA_003014735.1", "taxid": 1280637, "species_taxid": 1280637, "relation_to_type": "type", "validated": true, "ani": 88.2784, "matched_fragments": 2086, "total_fragments": 3532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix texasensis", "strain": "strain=DSM 44231", "accession": "GCA_003752005.1", "taxid": 103734, "species_taxid": 103734, "relation_to_type": "type", "validated": true, "ani": 87.8384, "matched_fragments": 2144, "total_fragments": 3532, "ani_threshold": 95, "status": 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