{ "type": "genome", "identifier": "GCF_009789675.1", "organism": "Paraburkholderia acidisoli", "title": "Paraburkholderia acidisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009789675.1", "bioproject": "PRJNA224116", "biosample": "SAMN11476409", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2571748", "species_taxid": "2571748", "organism_name": "Paraburkholderia acidisoli", "infraspecific_name": "strain=DHF22", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/22", "asm_name": "ASM978967v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_009789675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/789/675/GCF_009789675.1_ASM978967v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7945061", "genome_size_ungapped": "7945061", "gc_percent": "65.500000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009789675.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7106", "protein_coding_gene_count": "6937", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-22", "dateModified": "2019-12-22", "datePublished": "2019-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia acidisoli" ], "sample_taxid": [ "2571748" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangdong Province" ], "sample_host_location_id": [], "data_size": "2.163 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7945061", "Number of Sequences": "5", "Longest Sequences (bp)": "3240103", "N50 (bp)": "1829290", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "7002", "Average Protein Length": "326.6", "Coding Ratio (%)": "86.4", "Number of rRNAs": "12", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia acidisoli", "strain": "strain=DHF22", "accession": "GCA_009789675.1", "taxid": 2571748, "species_taxid": 2571748, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2645, "total_fragments": 2645, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia lycopersici", "strain": "strain=TNe-862", "accession": "GCA_900096975.1", "taxid": 416944, "species_taxid": 416944, "relation_to_type": "type", "validated": true, "ani": 85.8054, "matched_fragments": 1468, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidiphila", "strain": "strain=7Q-K02", "accession": "GCA_009789655.1", "taxid": 2571747, "species_taxid": 2571747, "relation_to_type": "type", "validated": true, "ani": 85.7672, "matched_fragments": 1632, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia heleia", "strain": "strain=NBRC 101817", "accession": "GCA_000739775.1", "taxid": 634127, "species_taxid": 634127, "relation_to_type": "type", "validated": true, "ani": 85.6748, "matched_fragments": 1528, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia guartelaensis", "strain": "strain=CNPSo 3008", "accession": "GCA_004353905.1", "taxid": 2546446, "species_taxid": 2546446, "relation_to_type": "type", "validated": true, "ani": 85.6689, "matched_fragments": 1645, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia tropica", "strain": "strain=Ppe8", "accession": "GCA_002071575.1", "taxid": 92647, "species_taxid": 92647, "relation_to_type": "type", "validated": true, "ani": 85.6359, "matched_fragments": 1745, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia tropica", "strain": "strain=LMG 22274", "accession": "GCA_900109265.1", "taxid": 92647, "species_taxid": 92647, "relation_to_type": "type", "validated": true, "ani": 85.5949, "matched_fragments": 1728, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia tropica", "strain": "strain=LMG 22274", "accession": "GCA_902833865.1", "taxid": 92647, "species_taxid": 92647, "relation_to_type": "type", "validated": true, "ani": 85.5686, "matched_fragments": 1741, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia eburnea", "strain": "strain=JCM 18070", "accession": "GCA_002917095.1", "taxid": 1189126, "species_taxid": 1189126, "relation_to_type": "type", "validated": true, "ani": 85.144, "matched_fragments": 1460, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 84.7815, "matched_fragments": 1548, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia oxyphila", "strain": "strain=NBRC 105797", "accession": "GCA_000685075.1", "taxid": 614212, "species_taxid": 614212, "relation_to_type": "type", "validated": true, "ani": 84.718, "matched_fragments": 1511, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia silviterrae", "strain": "strain=4M-K11", "accession": "GCA_004353915.1", "taxid": 2528715, "species_taxid": 2528715, "relation_to_type": "type", "validated": true, "ani": 84.6941, "matched_fragments": 1490, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ferrariae", "strain": "strain=NBRC 106233", "accession": "GCA_000685035.1", "taxid": 386056, "species_taxid": 386056, "relation_to_type": "type", "validated": true, "ani": 84.6865, "matched_fragments": 1394, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia bannensis", "strain": "strain=NBRC 103871", "accession": "GCA_000685015.1", "taxid": 765414, "species_taxid": 765414, "relation_to_type": "type", "validated": true, "ani": 84.659, "matched_fragments": 1589, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidipaludis", "strain": "strain=NBRC 101816", "accession": "GCA_000684975.1", "taxid": 660537, "species_taxid": 660537, "relation_to_type": "type", "validated": true, "ani": 84.2419, "matched_fragments": 1348, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 81.4444, "matched_fragments": 1158, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", 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76.1736, "matched_fragments": 119, "total_fragments": 2645, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009789675.1", "gtdb_species": "s__Paraburkholderia acidisoli", "ani": 100.0, "matched_fragments": 2645, "total_fragments": 2645, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003268775.1", "gtdb_species": "s__Paraburkholderia unamae", "ani": 86.0252, "matched_fragments": 1693, "total_fragments": 2645, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", 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