{ "type": "genome", "identifier": "GCF_009793355.1", "organism": "Vreelandella zhuhanensis", "title": "Vreelandella zhuhanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009793355.1", "bioproject": "PRJNA224116", "biosample": "SAMN13531224", "wgs_master": "WTKP00000000.1", "refseq_category": "reference genome", "taxid": "2684210", "species_taxid": "2684210", "organism_name": "Vreelandella zhuhanensis", "infraspecific_name": "strain=ZH2S", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/23", "asm_name": "ASM979335v1", "asm_submitter": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_009793355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/793/355/GCF_009793355.1_ASM979335v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3248142", "genome_size_ungapped": "3248078", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009793355.1-RS_2024_08_25", "annotation_date": "2024-08-25", "total_gene_count": "3062", "protein_coding_gene_count": "2947", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-23", "dateModified": "2019-12-23", "datePublished": "2019-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Vreelandella zhuhanensis" ], "sample_taxid": [ "2684210" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tibet" ], "sample_host_location_id": [], "data_size": "0.923 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3248142", "Number of Sequences": "23", "Longest Sequences (bp)": "499781", "N50 (bp)": "349321", "Gap Ratio (%)": "0.001970", "GCcontent (%)": "57.1", "Number of CDSs": "2994", "Average Protein Length": "323.8", "Coding Ratio (%)": "89.5", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas zhuhanensis", "strain": "strain=ZH2S", "accession": "GCA_009793355.1", "taxid": 2684210, "species_taxid": 2684210, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 78.7257, "matched_fragments": 375, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas hamiltonii", "strain": "strain=KCTC 22154", "accession": "GCA_014651775.1", "taxid": 502829, "species_taxid": 502829, "relation_to_type": "type", "validated": true, "ani": 78.6963, "matched_fragments": 350, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 78.6852, "matched_fragments": 357, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 78.639, "matched_fragments": 333, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 78.6367, "matched_fragments": 361, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 78.5162, "matched_fragments": 371, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": 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1684789, "species_taxid": 1684789, "relation_to_type": "type", "validated": true, "ani": 78.2477, "matched_fragments": 331, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas xinjiangensis", "strain": "strain=TRM 0175", "accession": "GCA_000759345.1", "taxid": 1166948, "species_taxid": 1166948, "relation_to_type": "type", "validated": true, "ani": 78.0954, "matched_fragments": 237, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas jeotgali", "strain": "strain=Hwa", "accession": "GCA_000334215.1", "taxid": 553386, "species_taxid": 553386, "relation_to_type": "type", "validated": true, "ani": 78.0605, "matched_fragments": 270, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009793355.1", "gtdb_species": "s__Halomonas 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