{
    "type": "genome",
    "identifier": "GCF_009797935.1",
    "organism": "Lunatibacter salilacus",
    "title": "Lunatibacter salilacus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "State Key Laboratory of Biogeology and Environmental Geology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009797935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12405228",
        "wgs_master": "VOLC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2483804",
        "species_taxid": "2483804",
        "organism_name": "Lunatibacter salilacus",
        "infraspecific_name": "strain=CUG 91308",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/12/24",
        "asm_name": "ASM979793v1",
        "asm_submitter": "State Key Laboratory of Biogeology and Environmental Geology",
        "gbrs_paired_asm": "GCA_009797935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/797/935/GCF_009797935.1_ASM979793v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6791886",
        "genome_size_ungapped": "6791166",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "68",
        "contig_count": "68",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009797935.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "5485",
        "protein_coding_gene_count": "5401",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-12-24",
    "dateModified": "2019-12-24",
    "datePublished": "2019-12-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lunatibacter salilacus"
        ],
        "sample_taxid": [
            "2483804"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Qinghai-Tibetan Plateau, Qinghai Lake"
        ],
        "sample_host_location_id": [],
        "data_size": "1.936 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 18.0,
            "max": 18.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6791886",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "779810",
        "N50 (bp)": "260592",
        "Gap Ratio (%)": "0.010660",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "5284",
        "Average Protein Length": "365.2",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lunatibacter salilacus",
                "strain": "strain=CUG 91308",
                "accession": "GCA_009797935.1",
                "taxid": 2483804,
                "species_taxid": 2483804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2232,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lunatimonas lonarensis",
                "strain": "strain=AK24",
                "accession": "GCA_000390185.1",
                "taxid": 1232681,
                "species_taxid": 1232681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1303,
                "matched_fragments": 179,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lunatimonas salinarum",
                "strain": "strain=KCTC 42988",
                "accession": "GCA_017811155.1",
                "taxid": 1774590,
                "species_taxid": 1774590,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.016,
                "matched_fragments": 196,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cyclobacterium salsum",
                "strain": "strain=SYSU L10167",
                "accession": "GCA_010119245.1",
                "taxid": 2666329,
                "species_taxid": 2666329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9979,
                "matched_fragments": 161,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cyclobacterium jeungdonense",
                "strain": "strain=KCTC 23150",
                "accession": "GCA_010994275.1",
                "taxid": 708087,
                "species_taxid": 708087,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9452,
                "matched_fragments": 148,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cyclobacterium roseum",
                "strain": "strain=SYSU L10180",
                "accession": "GCA_010119225.1",
                "taxid": 2666137,
                "species_taxid": 2666137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7596,
                "matched_fragments": 174,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cyclobacterium xiamenense",
                "strain": "strain=CGMCC 1.12432",
                "accession": "GCA_009467825.1",
                "taxid": 1297121,
                "species_taxid": 1297121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6546,
                "matched_fragments": 138,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Echinicola marina",
                "strain": "strain=SCS 3-6",
                "accession": "GCA_020463795.1",
                "taxid": 2859768,
                "species_taxid": 2859768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6308,
                "matched_fragments": 70,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cyclobacterium plantarum",
                "strain": "strain=GBPx2",
                "accession": "GCA_011290685.1",
                "taxid": 2716263,
                "species_taxid": 2716263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5505,
                "matched_fragments": 197,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cyclobacterium lianum",
                "strain": "strain=CGMCC 1.6102",
                "accession": "GCA_900143075.1",
                "taxid": 388280,
                "species_taxid": 388280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5112,
                "matched_fragments": 124,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belliella kenyensis",
                "strain": "strain=DSM 46651",
                "accession": "GCA_022549675.1",
                "taxid": 1472724,
                "species_taxid": 1472724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5016,
                "matched_fragments": 61,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus algorifonticola",
                "strain": "strain=hg1",
                "accession": "GCA_007655305.1",
                "taxid": 2593007,
                "species_taxid": 2593007,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3627,
                "matched_fragments": 63,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Echinicola salinicaeni",
                "strain": "strain=P51",
                "accession": "GCA_014280965.1",
                "taxid": 2762757,
                "species_taxid": 2762757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1608,
                "matched_fragments": 71,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus hitonicola",
                "strain": "strain=DSM 19315",
                "accession": "GCA_900113375.1",
                "taxid": 435880,
                "species_taxid": 435880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1372,
                "matched_fragments": 57,
                "total_fragments": 2234,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009797935.1",
                "gtdb_species": "s__Lunatimonas salilacus",
                "ani": 100.0,
                "matched_fragments": 2232,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Lunatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016124425.1",
                "gtdb_species": "s__Lunatimonas sp016124425",
                "ani": 78.4626,
                "matched_fragments": 483,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Lunatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018500185.1",
                "gtdb_species": "s__Litoribacter ruber",
                "ani": 77.1054,
                "matched_fragments": 60,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Litoribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017811155.1",
                "gtdb_species": "s__Lunatimonas salinarum",
                "ani": 77.039,
                "matched_fragments": 195,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Lunatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010119245.1",
                "gtdb_species": "s__Cyclobacterium sp010119245",
                "ani": 76.9983,
                "matched_fragments": 161,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010994275.1",
                "gtdb_species": "s__Cyclobacterium jeungdonense",
                "ani": 76.9439,
                "matched_fragments": 148,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010993705.1",
                "gtdb_species": "s__Cyclobacterium sp010993705",
                "ani": 76.835,
                "matched_fragments": 175,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010119225.1",
                "gtdb_species": "s__Cyclobacterium sp010119225",
                "ani": 76.7463,
                "matched_fragments": 175,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009467825.1",
                "gtdb_species": "s__Cyclobacterium xiamenense",
                "ani": 76.6558,
                "matched_fragments": 138,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.69",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003565295.1",
                "gtdb_species": "s__Negadavirga sp003565295",
                "ani": 76.641,
                "matched_fragments": 141,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Negadavirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900143075.1",
                "gtdb_species": "s__Cyclobacterium lianum",
                "ani": 76.5439,
                "matched_fragments": 122,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011290685.1",
                "gtdb_species": "s__Cyclobacterium plantarum",
                "ani": 76.5372,
                "matched_fragments": 197,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014762705.1",
                "gtdb_species": "s__Cyclobacterium sp014762705",
                "ani": 76.4502,
                "matched_fragments": 180,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007655305.1",
                "gtdb_species": "s__Algoriphagus sp007655305",
                "ani": 76.3627,
                "matched_fragments": 63,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006575665.1",
                "gtdb_species": "s__Echinicola sp006575665",
                "ani": 76.3318,
                "matched_fragments": 63,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113375.1",
                "gtdb_species": "s__Algoriphagus hitonicola",
                "ani": 76.1372,
                "matched_fragments": 57,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002002735.1",
                "gtdb_species": "s__Algoriphagus sp002002735",
                "ani": 75.966,
                "matched_fragments": 56,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007126775.1",
                "gtdb_species": "s__Cecembia sp007126775",
                "ani": 75.7626,
                "matched_fragments": 66,
                "total_fragments": 2234,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cecembia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "99.59",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lunatibacter",
        "salilacus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}