{ "tc_result": [ { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_009806975.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1039, "total_fragments": 1041, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_900215645.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9969, "matched_fragments": 1039, "total_fragments": 1041, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=DSM 7485", "accession": "GCA_007828845.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9419, "matched_fragments": 1019, "total_fragments": 1041, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=DSM 7485", "accession": "GCA_004011095.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9286, "matched_fragments": 999, "total_fragments": 1041, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter tritici", "strain": "strain=DSM 7486", "accession": "GCA_002932875.1", "taxid": 33888, "species_taxid": 33888, "relation_to_type": "type", "validated": true, "ani": 92.0594, "matched_fragments": 861, "total_fragments": 1041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter tanaceti", "strain": "strain=VKM Ac-2596", "accession": "GCA_001634385.1", "taxid": 1671680, "species_taxid": 1671680, "relation_to_type": "type", "validated": true, "ani": 85.9329, "matched_fragments": 681, "total_fragments": 1041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8673, "matched_fragments": 393, "total_fragments": 1041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 78.5469, "matched_fragments": 308, "total_fragments": 1041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 78.4859, "matched_fragments": 324, "total_fragments": 1041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.1911, "matched_fragments": 356, "total_fragments": 1041, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004011095.1", "gtdb_species": "s__Rathayibacter rathayi", "ani": 99.9286, "matched_fragments": 999, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 27, "status": "conclusive" }, { "accession": "GCF_002932875.1", "gtdb_species": "s__Rathayibacter tritici", "ani": 92.0594, "matched_fragments": 861, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.47", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_009866585.1", "gtdb_species": "s__Rathayibacter sp002930885", "ani": 89.1626, "matched_fragments": 832, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 55, "status": "-" }, { "accession": "GCF_009866655.1", "gtdb_species": "s__Rathayibacter sp009866655", "ani": 84.813, "matched_fragments": 756, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013205055.1", "gtdb_species": "s__Rathayibacter sp013205055", "ani": 84.8033, "matched_fragments": 754, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009834185.1", "gtdb_species": "s__Rathayibacter sp009834185", "ani": 84.793, "matched_fragments": 773, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013249015.1", "gtdb_species": "s__Rathayibacter agropyri", "ani": 84.6527, "matched_fragments": 763, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009834225.1", "gtdb_species": "s__Rathayibacter sp009834225", "ani": 84.5849, "matched_fragments": 746, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009807095.1", "gtdb_species": "s__Rathayibacter sp009807095", "ani": 84.5503, "matched_fragments": 736, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001995175.1", "gtdb_species": "s__Rathayibacter sp001995175", "ani": 84.3999, "matched_fragments": 695, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900177245.1", "gtdb_species": "s__Rathayibacter oskolensis", "ani": 84.0959, "matched_fragments": 744, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017355185.1", "gtdb_species": "s__Rathayibacter sp017355185", "ani": 84.0256, "matched_fragments": 699, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015351245.1", "gtdb_species": "s__Rathayibacter sp015351245", "ani": 83.6698, "matched_fragments": 672, "total_fragments": 1041, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }