{ "type": "genome", "identifier": "GCF_009811755.1", "organism": "Roseobacter cerasinus", "title": "Roseobacter cerasinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Photosynthetic microbial consortia, Biological Sciences, Tokyo Metropolitan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009811755.1", "bioproject": "PRJNA224116", "biosample": "SAMD00181891", "wgs_master": "BLIV00000000.1", "refseq_category": "reference genome", "taxid": "2602289", "species_taxid": "2602289", "organism_name": "Roseobacter cerasinus", "infraspecific_name": "strain=AI77", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/16", "asm_name": "ASM981175v1", "asm_submitter": "Photosynthetic microbial consortia, Biological Sciences, Tokyo Metropolitan University", "gbrs_paired_asm": "GCA_009811755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/811/755/GCF_009811755.1_ASM981175v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4472075", "genome_size_ungapped": "4472075", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009811755.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "4434", "protein_coding_gene_count": "4291", "non_coding_gene_count": "45", "pubmed_id": "32730197" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-16", "dateModified": "2019-12-16", "datePublished": "2019-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseobacter cerasinus" ], "sample_taxid": [ "2602289" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Ehime, Ainan, Uwa sea" ], "sample_host_location_id": [], "data_size": "1.257 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4472075", "Number of Sequences": "24", "Longest Sequences (bp)": "765952", "N50 (bp)": "441397", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.0", "Number of CDSs": "4349", "Average Protein Length": "307.5", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseobacter cerasinus", "strain": "strain=AI77", "accession": "GCA_009811755.1", "taxid": 2602289, "species_taxid": 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"strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 77.3801, "matched_fragments": 347, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DPG-138", "accession": "GCA_002115805.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.3175, "matched_fragments": 306, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DSM 29432", "accession": "GCA_003002975.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.308, "matched_fragments": 308, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.3025, "matched_fragments": 266, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 77.1299, "matched_fragments": 242, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibaca methylaminivorans", "strain": "strain=DSM 21219", "accession": "GCA_900156525.1", "taxid": 515897, "species_taxid": 515897, "relation_to_type": "type", "validated": true, "ani": 77.1079, "matched_fragments": 186, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter calidifons", "strain": "strain=M37P", "accession": "GCA_011174775.1", "taxid": 2715277, "species_taxid": 2715277, "relation_to_type": 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"aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseobacter", "cerasinus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }