{ "type": "genome", "identifier": "GCF_009811795.1", "organism": "Litoreibacter roseus", "title": "Litoreibacter roseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Photosynthetic Microbial Consortia, Biological science, Tokyo Metropolitan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009811795.1", "bioproject": "PRJNA224116", "biosample": "SAMD00181890", "wgs_master": "BLJE00000000.1", "refseq_category": "reference genome", "taxid": "2601869", "species_taxid": "2601869", "organism_name": "Litoreibacter roseus", "infraspecific_name": "strain=K6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/24", "asm_name": "ASM981179v1", "asm_submitter": "Photosynthetic Microbial Consortia, Biological science, Tokyo Metropolitan University", "gbrs_paired_asm": "GCA_009811795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/811/795/GCF_009811795.1_ASM981179v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4471068", "genome_size_ungapped": "4471068", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009811795.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4460", "protein_coding_gene_count": "4372", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-24", "dateModified": "2019-12-24", "datePublished": "2019-12-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Litoreibacter roseus" ], "sample_taxid": [ "2601869" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Ehime, Ainan, Uwa Sea" ], "sample_host_location_id": [], "data_size": "1.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4471068", "Number of Sequences": "27", "Longest Sequences (bp)": "1423177", "N50 (bp)": "1368206", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "4464", "Average Protein Length": "303.0", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litoreibacter roseus", "strain": "strain=K6", "accession": "GCA_009811795.1", "taxid": 2601869, "species_taxid": 2601869, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1477, "total_fragments": 1477, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 77.4187, "matched_fragments": 298, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dinoroseobacter shibae", "strain": "strain=DFL 12", "accession": "GCA_000018145.1", "taxid": 215813, "species_taxid": 215813, "relation_to_type": "type", "validated": true, "ani": 77.3514, "matched_fragments": 180, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter cerasinus", "strain": "strain=AI77", "accession": "GCA_009811755.1", "taxid": 2602289, "species_taxid": 2602289, "relation_to_type": "type", "validated": true, "ani": 77.3469, "matched_fragments": 161, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter marinintestinus", "strain": "strain=UB-M7", "accession": "GCA_007923355.1", "taxid": 1492905, "species_taxid": 1492905, "relation_to_type": "type", "validated": true, "ani": 77.2101, "matched_fragments": 127, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter janthinus", "strain": "strain=DSM 26921", "accession": "GCA_900111945.1", "taxid": 670154, "species_taxid": 670154, "relation_to_type": "type", "validated": true, "ani": 77.1048, "matched_fragments": 176, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter albidus", "strain": "strain=DSM 26922", "accession": "GCA_900107015.1", "taxid": 670155, "species_taxid": 670155, "relation_to_type": "type", "validated": true, "ani": 77.0766, "matched_fragments": 163, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.0442, "matched_fragments": 115, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita hallyeonensis", "strain": "strain=DSM 29431", "accession": "GCA_900129875.1", "taxid": 996342, "species_taxid": 996342, "relation_to_type": "type", "validated": true, "ani": 77.0113, "matched_fragments": 165, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 77.0081, "matched_fragments": 147, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_016583705.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 77.0032, "matched_fragments": 141, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter sedentarius", "strain": "strain=DSM 104836", "accession": "GCA_004342065.1", "taxid": 745311, "species_taxid": 745311, "relation_to_type": "type", "validated": true, "ani": 76.9865, "matched_fragments": 158, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_004345735.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 76.9684, "matched_fragments": 139, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_001633165.1", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 76.9226, "matched_fragments": 137, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ascidiaceicola", "strain": "strain=DSM 100566", "accession": "GCA_900129235.1", "taxid": 1486859, "species_taxid": 1486859, "relation_to_type": "type", "validated": true, "ani": 76.9175, "matched_fragments": 227, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_000520135.2", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 76.9077, "matched_fragments": 138, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 76.8755, "matched_fragments": 159, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter harenae", "strain": "strain=DP07", "accession": "GCA_009882975.1", "taxid": 2606218, "species_taxid": 2606218, "relation_to_type": "type", "validated": true, "ani": 76.8447, "matched_fragments": 120, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 76.8018, "matched_fragments": 71, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.7689, "matched_fragments": 147, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 76.6509, "matched_fragments": 145, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 76.6195, "matched_fragments": 82, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquatilis", "strain": "strain=DSM 3857", "accession": "GCA_900110025.1", "taxid": 933059, "species_taxid": 933059, "relation_to_type": "type", "validated": true, "ani": 76.6012, "matched_fragments": 133, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita lacus", "strain": "strain=CGMCC 1.12478", "accession": "GCA_014637725.1", "taxid": 1323742, "species_taxid": 1323742, "relation_to_type": "type", "validated": true, "ani": 76.5143, "matched_fragments": 161, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 76.4592, "matched_fragments": 125, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=CGMCC 1.7745", "accession": "GCA_007830625.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 76.2089, "matched_fragments": 111, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 76.1895, "matched_fragments": 138, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=DSM 21823", "accession": "GCA_003054195.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 76.1609, "matched_fragments": 115, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009811795.1", "gtdb_species": "s__Litoreibacter roseus", "ani": 100.0, "matched_fragments": 1477, "total_fragments": 1477, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196965.1", "gtdb_species": "s__Actibacterium_A naphthalenivorans", "ani": 77.1871, "matched_fragments": 171, "total_fragments": 1477, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900111945.1", "gtdb_species": "s__Litoreibacter janthinus", "ani": 77.1048, "matched_fragments": 176, "total_fragments": 1477, "gtdb_taxonomy": 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