{
    "type": "genome",
    "identifier": "GCF_009823375.1",
    "organism": "Francisella noatunensis subsp. noatunensis",
    "title": "Francisella noatunensis subsp. noatunensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tradictional Chinese medicine University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009823375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12877594",
        "wgs_master": "WBSX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "360196",
        "species_taxid": "657445",
        "organism_name": "Francisella noatunensis subsp. noatunensis",
        "infraspecific_name": "strain=2005/50/F292-6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/12/31",
        "asm_name": "ASM982337v1",
        "asm_submitter": "Tradictional Chinese medicine University",
        "gbrs_paired_asm": "GCA_009823375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/823/375/GCF_009823375.1_ASM982337v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1840633",
        "genome_size_ungapped": "1840633",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "182",
        "contig_count": "182",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "2058",
        "protein_coding_gene_count": "1805",
        "non_coding_gene_count": "42",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-12-31",
    "dateModified": "2019-12-31",
    "datePublished": "2019-12-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Francisella noatunensis subsp. noatunensis"
        ],
        "sample_taxid": [
            "360196"
        ],
        "sample_host_organism": [
            "farmed Atlantic cod"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway"
        ],
        "sample_host_location_id": [],
        "data_size": "0.503 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1840633",
        "Number of Sequences": "182",
        "Longest Sequences (bp)": "85657",
        "N50 (bp)": "14003",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.3",
        "Number of CDSs": "1884",
        "Average Protein Length": "274.9",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Francisella noatunensis subsp. noatunensis",
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                "accession": "GCA_009823375.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 520,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Francisella philomiragia",
                "strain": "strain=O#319L",
                "accession": "GCA_000833455.1",
                "taxid": 28110,
                "species_taxid": 28110,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Francisella philomiragia",
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                "accession": "GCA_000156715.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Francisella salina",
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                "accession": "GCA_000219045.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 468,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella hispaniensis",
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                "accession": "GCA_001608445.1",
                "taxid": 622488,
                "species_taxid": 622488,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella tularensis subsp. novicida",
                "strain": "strain=U112",
                "accession": "GCA_000014645.1",
                "taxid": 264,
                "species_taxid": 263,
                "relation_to_type": "type",
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                "ani": 82.0646,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella tularensis subsp. novicida",
                "strain": "strain=U112",
                "accession": "GCA_000833375.1",
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                "species_taxid": 263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0158,
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                "total_fragments": 529,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella uliginis",
                "strain": "strain=TX07-7310",
                "accession": "GCA_001895265.1",
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                "species_taxid": 573570,
                "relation_to_type": "type",
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                "ani": 80.021,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella opportunistica",
                "strain": "strain=PA05-1188",
                "accession": "GCA_003347135.1",
                "taxid": 2016517,
                "species_taxid": 2016517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0204,
                "matched_fragments": 306,
                "total_fragments": 529,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_014844275.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
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                "status": "inconclusive"
            },
            {
                "accession": "GCF_000156715.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.38",
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            },
            {
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                "num_clustered_genomes": 54,
                "status": "-"
            },
            {
                "accession": "GCF_007923265.1",
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            },
            {
                "accession": "GCF_001885235.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000764555.1",
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                "mean_intra_species_ani": "N/A",
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            }
        ]
    },
    "_bac2feature": {
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        "doubling_h": 0.477,
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    "_genome_taxon": [
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        "noatunensis",
        "subsp.",
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}