{ "type": "genome", "identifier": "GCF_009827305.1", "organism": "Croceibacterium xixiisoli", "title": "Croceibacterium xixiisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827305.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631588", "wgs_master": "WTYJ00000000.1", "refseq_category": "reference genome", "taxid": "1476466", "species_taxid": "1476466", "organism_name": "Croceibacterium xixiisoli", "infraspecific_name": "strain=S36", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982730v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/305/GCF_009827305.1_ASM982730v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3879280", "genome_size_ungapped": "3879260", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009827305.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3701", "protein_coding_gene_count": "3634", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Croceibacterium xixiisoli" ], "sample_taxid": [ "1476466" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hangzhou" ], "sample_host_location_id": [], "data_size": "1.067 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3879280", "Number of Sequences": "7", "Longest Sequences (bp)": "1905001", "N50 (bp)": "997747", "Gap Ratio (%)": "0.000516", "GCcontent (%)": "63.3", "Number of CDSs": "3652", "Average Protein Length": "320.2", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1290, 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"status": "below_threshold" }, { "organism_name": "Alteraurantiacibacter aestuarii", "strain": "strain=JCM 16339", "accession": "GCA_009827405.1", "taxid": 650004, "species_taxid": 650004, "relation_to_type": "type", "validated": true, "ani": 78.6851, "matched_fragments": 332, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium mercuriale", "strain": "strain=Coronado", "accession": "GCA_000802385.1", "taxid": 1572751, "species_taxid": 1572751, "relation_to_type": "type", "validated": true, "ani": 78.5004, "matched_fragments": 382, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 78.2433, "matched_fragments": 280, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pokkalii", "strain": "strain=KCTC 42224", "accession": "GCA_014652855.1", "taxid": 1770194, "species_taxid": 1770194, "relation_to_type": "type", "validated": true, "ani": 78.223, "matched_fragments": 339, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.1893, "matched_fragments": 316, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.1334, "matched_fragments": 326, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 78.1304, "matched_fragments": 273, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.1235, "matched_fragments": 346, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus marinus", "strain": "strain=E4A9", "accession": "GCA_001661675.2", "taxid": 450378, "species_taxid": 450378, "relation_to_type": "type", "validated": true, "ani": 78.1077, "matched_fragments": 312, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus mobilis", "strain": "strain=CGMCC 1.15360", "accession": "GCA_014642595.1", "taxid": 1703339, "species_taxid": 1703339, "relation_to_type": "type", "validated": true, "ani": 77.9376, "matched_fragments": 285, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 77.8942, "matched_fragments": 343, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 77.869, "matched_fragments": 302, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 77.8666, "matched_fragments": 269, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 77.8663, "matched_fragments": 267, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lentum", "strain": "strain=NBRC 107847", "accession": "GCA_001590965.1", "taxid": 145287, "species_taxid": 145287, "relation_to_type": "type", "validated": true, "ani": 77.7772, "matched_fragments": 358, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, "species_taxid": 1689985, "relation_to_type": "type", "validated": 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