{ "type": "genome", "identifier": "GCF_009827335.1", "organism": "Aurantiacibacter arachoides", "title": "Aurantiacibacter arachoides", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827335.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631590", "wgs_master": "WTYH00000000.1", "refseq_category": "na", "taxid": "1850444", "species_taxid": "1850444", "organism_name": "Aurantiacibacter arachoides", "infraspecific_name": "strain=RC4-10-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982733v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/335/GCF_009827335.1_ASM982733v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2941591", "genome_size_ungapped": "2941591", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-18", "total_gene_count": "2899", "protein_coding_gene_count": "2837", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Aurantiacibacter arachoides" ], "sample_taxid": [ "1850444" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Tibet" ], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2941591", "Number of Sequences": "1", "Longest Sequences (bp)": "2941591", "N50 (bp)": "2941591", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "2846", "Average Protein Length": "316.5", "Coding Ratio (%)": "91.9", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=RC4-10-4", "accession": "GCA_009827335.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 980, "total_fragments": 980, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=CGMCC 1.15507", "accession": "GCA_014643415.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 99.9995, "matched_fragments": 978, "total_fragments": 980, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 84.832, "matched_fragments": 732, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 80.2307, "matched_fragments": 544, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter zhengii", "strain": "strain=V18", "accession": "GCA_003584125.1", "taxid": 2307003, "species_taxid": 2307003, "relation_to_type": "type", "validated": true, "ani": 79.8772, "matched_fragments": 535, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 79.4611, "matched_fragments": 396, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter gangjinensis", "strain": "strain=CGMCC 1.15024", "accession": "GCA_001886695.1", "taxid": 502682, "species_taxid": 502682, "relation_to_type": "type", "validated": true, "ani": 79.227, "matched_fragments": 438, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 79.0899, "matched_fragments": 430, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteraurantiacibacter aestuarii", "strain": "strain=JCM 16339", "accession": "GCA_009827405.1", "taxid": 650004, "species_taxid": 650004, "relation_to_type": "type", "validated": true, "ani": 78.8993, "matched_fragments": 296, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.8952, "matched_fragments": 377, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.8351, "matched_fragments": 386, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 78.8053, "matched_fragments": 350, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gaetbuli", "strain": "strain=DSM 16225", "accession": "GCA_009827315.1", "taxid": 266952, "species_taxid": 266952, "relation_to_type": "type", "validated": true, "ani": 78.7443, "matched_fragments": 372, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 78.5953, "matched_fragments": 265, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.4412, "matched_fragments": 351, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter sediminis", "strain": "strain=JGD-13", "accession": "GCA_016019885.1", "taxid": 2793064, "species_taxid": 2793064, "relation_to_type": "type", "validated": true, "ani": 78.361, "matched_fragments": 374, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 77.9331, "matched_fragments": 336, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009827335.1", "gtdb_species": "s__Alteraurantiacibacter arachoides", "ani": 100.0, "matched_fragments": 980, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001010945.1", "gtdb_species": "s__Alteraurantiacibacter luteus", "ani": 84.832, "matched_fragments": 732, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003605195.1", "gtdb_species": "s__Alteraurantiacibacter odishensis", "ani": 80.2363, "matched_fragments": 543, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003584125.1", "gtdb_species": "s__Alteraurantiacibacter zhengii", "ani": 79.8818, "matched_fragments": 534, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827655.1", "gtdb_species": "s__Alteraurantiacibacter buctensis", "ani": 79.8243, "matched_fragments": 477, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003605475.1", "gtdb_species": "s__Alteraurantiacibacter aquimixticola_A", "ani": 79.6198, "matched_fragments": 437, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003815535.1", "gtdb_species": "s__Alteraurantiacibacter spongiae", "ani": 79.4335, "matched_fragments": 499, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017308255.1", "gtdb_species": "s__Croceibacterium sp001897135", "ani": 79.2162, "matched_fragments": 392, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009827515.1", "gtdb_species": "s__Pelagerythrobacter marinus", "ani": 79.0859, "matched_fragments": 431, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004965515.1", "gtdb_species": "s__Alteraurantiacibacter aquimixticola", "ani": 79.0657, "matched_fragments": 492, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001698205.1", "gtdb_species": "s__Tsuneonella dongtanensis", "ani": 79.0261, "matched_fragments": 339, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Tsuneonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003569745.1", "gtdb_species": "s__Croceibacterium sp003569745", "ani": 78.9898, "matched_fragments": 400, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016793865.1", "gtdb_species": "s__Qipengyuania sp016793865", "ani": 78.9806, "matched_fragments": 329, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002337385.1", "gtdb_species": "s__Alteraurantiacibacter sp002337385", "ani": 78.9381, "matched_fragments": 392, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004135625.1", "gtdb_species": "s__Pelagerythrobacter rhizovicinus", "ani": 78.9064, "matched_fragments": 376, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000176355.1", "gtdb_species": "s__Alteriqipengyuania bathyomarina", "ani": 78.794, "matched_fragments": 376, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteriqipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "96.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_009827315.1", "gtdb_species": "s__Qipengyuania gaetbuli", "ani": 78.7394, "matched_fragments": 373, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002279825.1", "gtdb_species": "s__Croceibacterium sp002279825", "ani": 78.6391, "matched_fragments": 391, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018205975.1", "gtdb_species": "s__Erythrobacter sp018205975", "ani": 78.4872, "matched_fragments": 348, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002729695.1", "gtdb_species": "s__Alteriqipengyuania sp002729695", "ani": 78.3885, "matched_fragments": 351, "total_fragments": 980, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteriqipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.11", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Aurantiacibacter", "arachoides" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }