{ "type": "genome", "identifier": "GCF_009827575.1", "organism": "Alteriqipengyuania halimionae", "title": "Alteriqipengyuania halimionae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827575.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631580", "wgs_master": "WTYR00000000.1", "refseq_category": "reference genome", "taxid": "1926630", "species_taxid": "1926630", "organism_name": "Alteriqipengyuania halimionae", "infraspecific_name": "strain=LMG 29519", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982757v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/575/GCF_009827575.1_ASM982757v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2808696", "genome_size_ungapped": "2808696", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009827575.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2748", "protein_coding_gene_count": "2684", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteriqipengyuania halimionae" ], "sample_taxid": [ "1926630" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Aveiro" ], "sample_host_location_id": [], "data_size": "0.776 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2808696", "Number of Sequences": "2", "Longest Sequences (bp)": "2797261", "N50 (bp)": "2797261", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "2695", "Average Protein Length": "320.5", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 79.5926, "matched_fragments": 414, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 79.3924, "matched_fragments": 421, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gaetbuli", "strain": "strain=DSM 16225", "accession": "GCA_009827315.1", "taxid": 266952, "species_taxid": 266952, "relation_to_type": "type", "validated": true, "ani": 79.378, "matched_fragments": 403, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 79.33, "matched_fragments": 426, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 79.3199, "matched_fragments": 413, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania sphaerica", "strain": "strain=GH29", "accession": "GCA_019711595.1", "taxid": 2867243, "species_taxid": 2867243, "relation_to_type": "type", "validated": true, "ani": 79.2893, "matched_fragments": 389, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 79.2165, "matched_fragments": 378, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 79.1597, "matched_fragments": 352, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 79.1536, "matched_fragments": 415, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania seohaensis", "strain": "strain=SW-135", "accession": "GCA_002795865.1", "taxid": 266951, "species_taxid": 266951, "relation_to_type": "type", "validated": true, "ani": 79.1529, "matched_fragments": 340, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 79.1282, "matched_fragments": 353, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania nanhaisediminis", "strain": "strain=CGMCC 1.7715", "accession": "GCA_900115585.1", "taxid": 604088, "species_taxid": 604088, "relation_to_type": "type", "validated": true, "ani": 79.081, "matched_fragments": 355, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania intermedia", "strain": "strain=GH38", "accession": "GCA_019711615.1", "taxid": 2867244, "species_taxid": 2867244, "relation_to_type": "type", "validated": true, "ani": 79.0684, "matched_fragments": 348, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 79.0598, "matched_fragments": 321, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania polymorpha", "strain": "strain=1NDH17", "accession": "GCA_019711435.1", "taxid": 2867234, "species_taxid": 2867234, "relation_to_type": "type", "validated": true, "ani": 78.9929, "matched_fragments": 394, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.8993, "matched_fragments": 362, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.8891, "matched_fragments": 352, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aquimaris", "strain": "strain=JCM 12189", "accession": "GCA_009827445.1", "taxid": 255984, "species_taxid": 255984, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8798, "matched_fragments": 365, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.7701, "matched_fragments": 361, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 78.6688, "matched_fragments": 326, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella troitsensis", "strain": "strain=KMM 6042", "accession": "GCA_003730315.1", "taxid": 292222, "species_taxid": 292222, "relation_to_type": "type", "validated": true, "ani": 78.6579, "matched_fragments": 322, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella troitsensis", "strain": "strain=JCM 17037", "accession": "GCA_001441535.1", "taxid": 292222, "species_taxid": 292222, "relation_to_type": "type", "validated": true, "ani": 78.6171, "matched_fragments": 324, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 78.5845, "matched_fragments": 344, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, "species_taxid": 1689985, "relation_to_type": "type", "validated": true, "ani": 78.518, "matched_fragments": 283, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=CGMCC 1.15507", "accession": "GCA_014643415.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 78.371, "matched_fragments": 304, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=RC4-10-4", "accession": "GCA_009827335.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 78.3175, "matched_fragments": 317, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009827575.1", "gtdb_species": "s__Alteriqipengyuania_A halimionae", "ani": 100.0, "matched_fragments": 935, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteriqipengyuania_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014641655.1", "gtdb_species": "s__Alteriqipengyuania_A marina", "ani": 82.7725, "matched_fragments": 665, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteriqipengyuania_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016764075.1", "gtdb_species": "s__Qipengyuania sp016764075", "ani": 79.6509, "matched_fragments": 317, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827295.1", "gtdb_species": "s__Qipengyuania pelagi", "ani": 79.3751, "matched_fragments": 423, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827315.1", "gtdb_species": "s__Qipengyuania gaetbuli", "ani": 79.366, "matched_fragments": 404, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003355455.1", "gtdb_species": "s__Qipengyuania aurea", "ani": 79.3106, "matched_fragments": 371, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009993605.1", "gtdb_species": "s__Qipengyuania sp009993605", "ani": 79.2409, "matched_fragments": 430, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001719165.1", "gtdb_species": "s__Erythrobacter litoralis", "ani": 79.1551, "matched_fragments": 351, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001028625.1", "gtdb_species": "s__Pelagerythrobacter marensis", "ani": 78.8856, "matched_fragments": 353, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015529805.1", "gtdb_species": "s__Qipengyuania soli", "ani": 78.8827, "matched_fragments": 362, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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