{ "type": "genome", "identifier": "GCF_009827595.1", "organism": "Altericroceibacterium endophyticum", "title": "Altericroceibacterium endophyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827595.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631578", "wgs_master": "WTYT00000000.1", "refseq_category": "reference genome", "taxid": "1808508", "species_taxid": "1808508", "organism_name": "Altericroceibacterium endophyticum", "infraspecific_name": "strain=LMG 29518", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982759v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/595/GCF_009827595.1_ASM982759v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3474520", "genome_size_ungapped": "3474420", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009827595.1-RS_2024_03_16", "annotation_date": "2024-03-16", "total_gene_count": "3192", "protein_coding_gene_count": "3121", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Altericroceibacterium endophyticum" ], "sample_taxid": [ "1808508" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Aveiro" ], "sample_host_location_id": [], "data_size": "0.978 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3474520", "Number of Sequences": "12", "Longest Sequences (bp)": "821297", "N50 (bp)": "502492", "Gap Ratio (%)": "0.002878", "GCcontent (%)": "58.6", "Number of CDSs": "3178", "Average Protein Length": "330.2", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Altericroceibacterium endophyticum", "strain": "strain=LMG 29518", "accession": "GCA_009827595.1", "taxid": 1808508, 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"matched_fragments": 249, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter sediminis", "strain": "strain=JGD-13", "accession": "GCA_016019885.1", "taxid": 2793064, "species_taxid": 2793064, "relation_to_type": "type", "validated": true, "ani": 77.4464, "matched_fragments": 178, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 77.3561, "matched_fragments": 192, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 77.3163, "matched_fragments": 158, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 77.3076, "matched_fragments": 213, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 77.2593, "matched_fragments": 165, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter aquaemixtae", "strain": "strain=KCTC 52763", "accession": "GCA_009827395.1", "taxid": 1958940, "species_taxid": 1958940, "relation_to_type": "type", "validated": true, "ani": 77.202, "matched_fragments": 184, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 77.1628, "matched_fragments": 192, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=JCM 20691", "accession": "GCA_002155655.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 77.1523, "matched_fragments": 190, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium colocasiae", "strain": "strain=KCTC 32255", "accession": "GCA_014652555.1", "taxid": 1256513, "species_taxid": 1256513, "relation_to_type": "type", "validated": true, "ani": 76.9492, "matched_fragments": 156, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium xenophagum", "strain": "strain=NBRC 107872", "accession": "GCA_000367345.1", "taxid": 121428, "species_taxid": 121428, "relation_to_type": "type", "validated": true, "ani": 76.8712, "matched_fragments": 141, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 76.6224, "matched_fragments": 136, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus contaminans", "strain": "strain=KCTC32445", "accession": "GCA_007280415.1", "taxid": 1343899, "species_taxid": 1343899, "relation_to_type": "type", "validated": true, "ani": 76.6066, "matched_fragments": 85, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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