{ "type": "genome", "identifier": "GCF_009827615.1", "organism": "Allopontixanthobacter confluentis", "title": "Allopontixanthobacter confluentis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827615.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631577", "wgs_master": "WTYU00000000.1", "refseq_category": "reference genome", "taxid": "1849021", "species_taxid": "1849021", "organism_name": "Allopontixanthobacter confluentis", "infraspecific_name": "strain=KCTC 52259", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982761v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/615/GCF_009827615.1_ASM982761v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2934197", "genome_size_ungapped": "2934187", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009827615.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2790", "protein_coding_gene_count": "2713", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Allopontixanthobacter confluentis" ], "sample_taxid": [ "1849021" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seocheon" ], "sample_host_location_id": [], "data_size": "0.818 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2934197", "Number of Sequences": "4", "Longest Sequences (bp)": "1771036", "N50 (bp)": "1771036", "Gap Ratio (%)": "0.000341", "GCcontent (%)": "59.1", "Number of CDSs": "2768", "Average Protein Length": "318.5", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Allopontixanthobacter confluentis", "strain": "strain=KCTC 52259", "accession": "GCA_009827615.1", "taxid": 1849021, "species_taxid": 1849021, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 975, "total_fragments": 976, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, "species_taxid": 1689985, "relation_to_type": "type", "validated": true, "ani": 78.8902, "matched_fragments": 410, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter aquaemixtae", "strain": "strain=KCTC 52763", "accession": "GCA_009827395.1", "taxid": 1958940, "species_taxid": 1958940, "relation_to_type": "type", "validated": true, "ani": 78.2685, "matched_fragments": 308, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter luteolus", "strain": "strain=SW-109", "accession": "GCA_009828095.1", "taxid": 295089, "species_taxid": 295089, 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"ani": 77.8209, "matched_fragments": 281, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.6693, "matched_fragments": 277, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.6135, "matched_fragments": 277, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter gangjinensis", "strain": "strain=JCM 17802", "accession": "GCA_009827545.1", "taxid": 1028742, "species_taxid": 1028742, "relation_to_type": "type", "validated": true, "ani": 77.4942, "matched_fragments": 222, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.4375, "matched_fragments": 236, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 77.4265, "matched_fragments": 248, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.3865, "matched_fragments": 236, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 77.3677, "matched_fragments": 231, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altericroceibacterium indicum", "strain": "strain=DSM 18604", "accession": "GCA_009828105.1", "taxid": 374177, "species_taxid": 374177, "relation_to_type": "type", "validated": true, "ani": 77.3667, "matched_fragments": 172, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 77.3282, "matched_fragments": 240, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 77.3164, "matched_fragments": 201, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 77.3115, "matched_fragments": 210, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania algicida", "strain": "strain=KEMB 9005-328", "accession": "GCA_009828025.1", "taxid": 1836209, "species_taxid": 1836209, "relation_to_type": "type", "validated": true, "ani": 77.2718, "matched_fragments": 236, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus hydrothermalis", "strain": "strain=JLT1", "accession": "GCA_022378335.1", "taxid": 2867964, "species_taxid": 2867964, "relation_to_type": "type", "validated": true, "ani": 77.2713, "matched_fragments": 202, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009827615.1", "gtdb_species": "s__Pseudopontixanthobacter_A confluentis", "ani": 100.0, "matched_fragments": 976, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pseudopontixanthobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009828115.1", "gtdb_species": "s__Pseudopontixanthobacter_A sediminis", "ani": 78.8794, 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"matched_fragments": 277, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Caenibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014983025.1", "gtdb_species": "s__Erythrobacter sp014983025", "ani": 77.8167, "matched_fragments": 258, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001028625.1", "gtdb_species": "s__Pelagerythrobacter marensis", "ani": 77.673, "matched_fragments": 276, 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"total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pseudopontixanthobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003344885.1", "gtdb_species": "s__ZODW24 sp003344885", "ani": 77.5824, "matched_fragments": 247, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__ZODW24", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001542855.1", "gtdb_species": "s__Qipengyuania sp001542855", "ani": 77.5618, "matched_fragments": 242, "total_fragments": 976, 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Allopontixanthobacter", "confluentis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }