{ "type": "genome", "identifier": "GCF_009827635.1", "organism": "Parapontixanthobacter aurantiacus", "title": "Parapontixanthobacter aurantiacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827635.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631575", "wgs_master": "WTYW00000000.1", "refseq_category": "reference genome", "taxid": "1463599", "species_taxid": "1463599", "organism_name": "Parapontixanthobacter aurantiacus", "infraspecific_name": "strain=MCCC 1A09962", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982763v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/635/GCF_009827635.1_ASM982763v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2895130", "genome_size_ungapped": "2895130", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009827635.1-RS_2024_03_16", "annotation_date": "2024-03-16", "total_gene_count": "2783", "protein_coding_gene_count": "2715", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Parapontixanthobacter aurantiacus" ], "sample_taxid": [ "1463599" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "0.810 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2895130", "Number of Sequences": "7", "Longest Sequences (bp)": "1686974", "N50 (bp)": "1686974", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "2728", "Average Protein Length": "317.4", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Qipengyuania nanhaisediminis", "strain": "strain=CGMCC 1.7715", "accession": "GCA_900115585.1", "taxid": 604088, "species_taxid": 604088, "relation_to_type": "type", "validated": true, "ani": 79.2216, "matched_fragments": 336, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania polymorpha", "strain": "strain=1NDH17", "accession": "GCA_019711435.1", "taxid": 2867234, "species_taxid": 2867234, "relation_to_type": "type", "validated": true, "ani": 78.673, "matched_fragments": 340, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 78.6554, "matched_fragments": 341, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.6204, "matched_fragments": 349, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania seohaensis", "strain": "strain=SW-135", "accession": "GCA_002795865.1", "taxid": 266951, "species_taxid": 266951, "relation_to_type": "type", "validated": true, "ani": 78.6012, "matched_fragments": 305, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 78.5892, "matched_fragments": 257, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania sphaerica", "strain": "strain=GH29", "accession": "GCA_019711595.1", "taxid": 2867243, "species_taxid": 2867243, "relation_to_type": "type", "validated": true, "ani": 78.5101, "matched_fragments": 340, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.4333, "matched_fragments": 370, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.4262, "matched_fragments": 333, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", "strain": "strain=6D36", "accession": "GCA_015529805.1", "taxid": 2782568, "species_taxid": 2782568, "relation_to_type": "type", "validated": true, "ani": 78.3884, "matched_fragments": 273, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 78.3452, "matched_fragments": 326, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania intermedia", "strain": "strain=GH38", "accession": "GCA_019711615.1", "taxid": 2867244, "species_taxid": 2867244, "relation_to_type": "type", "validated": true, "ani": 78.3244, "matched_fragments": 319, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aquimaris", "strain": "strain=JCM 12189", "accession": "GCA_009827445.1", "taxid": 255984, "species_taxid": 255984, "relation_to_type": "suspected-type", "validated": true, "ani": 78.31, "matched_fragments": 294, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.2741, "matched_fragments": 288, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus marinus", "strain": "strain=E4A9", "accession": "GCA_001661675.2", "taxid": 450378, "species_taxid": 450378, "relation_to_type": "type", "validated": true, "ani": 78.2669, "matched_fragments": 269, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.2163, "matched_fragments": 329, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania algicida", "strain": "strain=KEMB 9005-328", "accession": "GCA_009828025.1", "taxid": 1836209, "species_taxid": 1836209, "relation_to_type": "type", "validated": true, "ani": 78.1126, "matched_fragments": 245, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella troitsensis", "strain": "strain=KMM 6042", "accession": "GCA_003730315.1", "taxid": 292222, "species_taxid": 292222, "relation_to_type": "type", "validated": true, "ani": 78.0805, "matched_fragments": 239, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 78.0503, "matched_fragments": 226, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter donghaensis", "strain": "strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, 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true, "ani": 77.9734, "matched_fragments": 273, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania vesicularis", "strain": "strain=1NDH10", "accession": "GCA_019711415.1", "taxid": 2867232, "species_taxid": 2867232, "relation_to_type": "type", "validated": true, "ani": 77.837, "matched_fragments": 295, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, "species_taxid": 1689985, "relation_to_type": "type", "validated": true, "ani": 77.5356, "matched_fragments": 269, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium naphthalenivorans", "strain": "strain=NBRC 102051", "accession": "GCA_001590985.1", "taxid": 273168, "species_taxid": 273168, "relation_to_type": "type", "validated": true, "ani": 77.5165, "matched_fragments": 205, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus sediminis", "strain": "strain=S2-4-2", "accession": "GCA_007570835.1", "taxid": 2571150, "species_taxid": 2571150, "relation_to_type": "type", "validated": true, "ani": 77.4443, "matched_fragments": 219, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium estronivorans", "strain": "strain=AXB", "accession": "GCA_008692605.1", "taxid": 1577690, "species_taxid": 1577690, "relation_to_type": "type", "validated": true, "ani": 77.0991, "matched_fragments": 143, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium guangzhouense", "strain": "strain=SA925", "accession": "GCA_002896965.1", "taxid": 1850347, "species_taxid": 1850347, "relation_to_type": "type", "validated": true, "ani": 77.0482, "matched_fragments": 185, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 76.9528, "matched_fragments": 160, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009827635.1", "gtdb_species": "s__Parapontixanthobacter aurantiacus", "ani": 100.0, "matched_fragments": 961, "total_fragments": 962, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parapontixanthobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": 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