{ "type": "genome", "identifier": "GCF_009827655.1", "organism": "Alteraurantiacibacter buctensis", "title": "Alteraurantiacibacter buctensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827655.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631576", "wgs_master": "WTYV00000000.1", "refseq_category": "reference genome", "taxid": "1503981", "species_taxid": "1503981", "organism_name": "Alteraurantiacibacter buctensis", "infraspecific_name": "strain=M0322", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982765v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/655/GCF_009827655.1_ASM982765v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3772944", "genome_size_ungapped": "3772834", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009827655.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "3717", "protein_coding_gene_count": "3627", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteraurantiacibacter buctensis" ], "sample_taxid": [ "1503981" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Mohe Basin" ], "sample_host_location_id": [], "data_size": "1.036 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3772944", "Number of Sequences": "22", "Longest Sequences (bp)": "972353", "N50 (bp)": "347885", "Gap Ratio (%)": "0.002915", "GCcontent (%)": "66.1", "Number of CDSs": "3663", "Average Protein Length": "314.9", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteraurantiacibacter aestuarii", "strain": "strain=JCM 16339", "accession": "GCA_009827405.1", "taxid": 650004, "species_taxid": 650004, "relation_to_type": "type", "validated": true, "ani": 80.0246, "matched_fragments": 424, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter xanthus", "strain": "strain=CCTCC AB 2015396", "accession": "GCA_003584015.1", "taxid": 1784712, "species_taxid": 1784712, "relation_to_type": "type", "validated": true, "ani": 79.891, "matched_fragments": 568, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter zhengii", "strain": "strain=V18", "accession": "GCA_003584125.1", "taxid": 2307003, "species_taxid": 2307003, "relation_to_type": "type", "validated": true, "ani": 79.5289, "matched_fragments": 458, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 79.2917, "matched_fragments": 404, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 79.2743, "matched_fragments": 440, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium mercuriale", "strain": "strain=Coronado", "accession": "GCA_000802385.1", "taxid": 1572751, "species_taxid": 1572751, "relation_to_type": "type", "validated": true, "ani": 79.0103, "matched_fragments": 412, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella aeria", "strain": "strain=100921-2", "accession": "GCA_009827495.1", "taxid": 1837929, "species_taxid": 1837929, "relation_to_type": "type", "validated": true, "ani": 78.9509, "matched_fragments": 332, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.9395, "matched_fragments": 414, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=DSM 100738", "accession": "GCA_014199315.1", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.9168, "matched_fragments": 420, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.9017, "matched_fragments": 413, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter rhizosphaerae", "strain": "strain=GH3-10", "accession": "GCA_009807005.1", "taxid": 2691582, "species_taxid": 2691582, "relation_to_type": "type", "validated": true, "ani": 78.8948, "matched_fragments": 475, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSM 17193", "accession": "GCA_002155305.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 78.8845, "matched_fragments": 350, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 78.8445, "matched_fragments": 351, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 78.808, "matched_fragments": 363, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 78.7772, "matched_fragments": 400, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.764, "matched_fragments": 369, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 78.747, "matched_fragments": 432, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 78.7342, "matched_fragments": 336, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 78.7182, "matched_fragments": 328, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 78.7064, "matched_fragments": 350, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.6981, "matched_fragments": 355, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium colocasiae", "strain": "strain=KCTC 32255", "accession": "GCA_014652555.1", "taxid": 1256513, "species_taxid": 1256513, "relation_to_type": "type", "validated": true, "ani": 78.5988, "matched_fragments": 400, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 78.5343, "matched_fragments": 408, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.4324, "matched_fragments": 367, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella deserti", "strain": "strain=CGMCC 1.15959", "accession": "GCA_014644315.1", "taxid": 2035528, "species_taxid": 2035528, "relation_to_type": "type", "validated": true, "ani": 78.4068, "matched_fragments": 316, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 78.1164, "matched_fragments": 298, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 78.0763, "matched_fragments": 240, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009827655.1", "gtdb_species": "s__Alteraurantiacibacter buctensis", "ani": 100.0, "matched_fragments": 1247, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004965515.1", "gtdb_species": "s__Alteraurantiacibacter aquimixticola", "ani": 80.2953, "matched_fragments": 625, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827405.1", "gtdb_species": "s__Alteraurantiacibacter aestuarii", "ani": 80.0173, "matched_fragments": 425, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003605195.1", "gtdb_species": "s__Alteraurantiacibacter odishensis", "ani": 79.5294, "matched_fragments": 530, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017302615.1", "gtdb_species": "s__Novosphingobium sp017302615", "ani": 79.3472, "matched_fragments": 403, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014763545.1", "gtdb_species": "s__JACXVD01 sp014763545", "ani": 79.1113, "matched_fragments": 428, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__JACXVD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000802385.1", "gtdb_species": "s__Croceibacterium mercuriale", "ani": 79.0105, "matched_fragments": 412, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001008165.2", "gtdb_species": "s__Croceibacterium atlanticum", "ani": 78.9015, "matched_fragments": 413, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009807005.1", "gtdb_species": "s__Alteraurantiacibacter rhizosphaerae", "ani": 78.8948, "matched_fragments": 475, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 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