{ "type": "genome", "identifier": "GCF_009827995.1", "organism": "Parerythrobacter jejuensis", "title": "Parerythrobacter jejuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009827995.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631593", "wgs_master": "WTYE00000000.1", "refseq_category": "reference genome", "taxid": "795812", "species_taxid": "795812", "organism_name": "Parerythrobacter jejuensis", "infraspecific_name": "strain=JCM 16677", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982799v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_009827995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/827/995/GCF_009827995.1_ASM982799v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4149941", "genome_size_ungapped": "4149941", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009827995.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4060", "protein_coding_gene_count": "3986", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Parerythrobacter jejuensis" ], "sample_taxid": [ "795812" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "1.166 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 29.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4149941", "Number of Sequences": "1", "Longest Sequences (bp)": "4149941", "N50 (bp)": "4149941", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "3993", "Average Protein Length": "320.8", "Coding Ratio (%)": "92.6", "Number of rRNAs": "6", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parerythrobacter jejuensis", "strain": "strain=JCM 16677", "accession": "GCA_009827995.1", "taxid": 795812, "species_taxid": 795812, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1167, "total_fragments": 1383, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 78.3069, "matched_fragments": 321, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.2977, "matched_fragments": 339, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.2754, "matched_fragments": 321, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania intermedia", "strain": "strain=GH38", "accession": "GCA_019711615.1", "taxid": 2867244, "species_taxid": 2867244, "relation_to_type": "type", "validated": true, "ani": 78.2731, "matched_fragments": 311, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 78.2237, "matched_fragments": 310, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania sphaerica", "strain": "strain=GH29", "accession": "GCA_019711595.1", "taxid": 2867243, "species_taxid": 2867243, "relation_to_type": "type", "validated": true, "ani": 78.166, "matched_fragments": 319, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 78.1003, "matched_fragments": 291, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.0795, "matched_fragments": 317, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.059, "matched_fragments": 335, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.0376, "matched_fragments": 278, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.033, "matched_fragments": 317, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter zhengii", "strain": "strain=V18", "accession": "GCA_003584125.1", "taxid": 2307003, "species_taxid": 2307003, "relation_to_type": "type", "validated": true, "ani": 77.993, "matched_fragments": 246, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 77.9861, "matched_fragments": 328, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 77.9702, "matched_fragments": 347, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter aquaemixtae", "strain": "strain=KCTC 52763", "accession": "GCA_009827395.1", "taxid": 1958940, "species_taxid": 1958940, "relation_to_type": "type", "validated": true, "ani": 77.9555, "matched_fragments": 318, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter confluentis", "strain": "strain=KCTC 52259", "accession": "GCA_009827615.1", "taxid": 1849021, "species_taxid": 1849021, "relation_to_type": "type", "validated": true, "ani": 77.9378, "matched_fragments": 255, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 77.9134, "matched_fragments": 313, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, "species_taxid": 1689985, "relation_to_type": "type", "validated": true, "ani": 77.8562, "matched_fragments": 273, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 77.6711, "matched_fragments": 330, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altericroceibacterium spongiae", "strain": "strain=HN-Y73", "accession": "GCA_003610805.1", "taxid": 2320269, "species_taxid": 2320269, "relation_to_type": "type", "validated": true, "ani": 77.6308, "matched_fragments": 128, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella flava", "strain": "strain=MS1-4", "accession": "GCA_002870965.1", "taxid": 2055955, "species_taxid": 2055955, "relation_to_type": "type", "validated": true, "ani": 77.5594, "matched_fragments": 236, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella suprasediminis", "strain": "strain=Ery12", "accession": "GCA_003605755.1", "taxid": 2306996, "species_taxid": 2306996, "relation_to_type": "type", "validated": true, "ani": 77.5335, "matched_fragments": 222, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 77.4742, "matched_fragments": 221, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altericroceibacterium indicum", "strain": "strain=DSM 18604", "accession": "GCA_009828105.1", "taxid": 374177, "species_taxid": 374177, "relation_to_type": "type", "validated": true, "ani": 77.3841, "matched_fragments": 129, "total_fragments": 1383, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 29.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000013005.1", "gtdb_species": "s__Altererythrobacter_D litoralis_A", "ani": 79.5796, "matched_fragments": 527, "total_fragments": 1383, 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