{ "type": "genome", "identifier": "GCF_009828195.1", "organism": "Gordonia mangrovi", "title": "Gordonia mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hainan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009828195.1", "bioproject": "PRJNA224116", "biosample": "SAMN13228335", "wgs_master": "WMBR00000000.1", "refseq_category": "na", "taxid": "2665643", "species_taxid": "2665643", "organism_name": "Gordonia mangrovi", "infraspecific_name": "strain=HNM0687", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/02", "asm_name": "ASM982819v1", "asm_submitter": "Hainan University", "gbrs_paired_asm": "GCA_009828195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/828/195/GCF_009828195.1_ASM982819v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5365300", "genome_size_ungapped": "5365206", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-18", "total_gene_count": "4881", "protein_coding_gene_count": "4763", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-02", "dateModified": "2020-01-02", "datePublished": "2020-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia mangrovi" ], "sample_taxid": [ "2665643" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hainan" ], "sample_host_location_id": [], "data_size": "1.465 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5365300", "Number of Sequences": "18", "Longest Sequences (bp)": "1736985", "N50 (bp)": "722718", "Gap Ratio (%)": "0.001752", "GCcontent (%)": "67.0", "Number of CDSs": "4870", "Average Protein Length": "334.6", "Coding Ratio (%)": "91.1", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_009828195.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1777, "total_fragments": 1777, "ani_threshold": 95, "status": "conclusive" }, { 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"accession": "GCA_014673215.1", "taxid": 589403, "species_taxid": 589403, "relation_to_type": "type", "validated": true, "ani": 80.5337, "matched_fragments": 954, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=FDAARGOS_1594", "accession": "GCA_020731255.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.1668, "matched_fragments": 817, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.1329, "matched_fragments": 818, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amicalis", "strain": "strain=NBRC 100051", "accession": "GCA_000332995.1", "taxid": 89053, "species_taxid": 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004193205.1", "gtdb_species": "s__Gordonia sediminis", "ani": 81.6011, "matched_fragments": 1089, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000298195.1", "gtdb_species": "s__Gordonia rhizosphera", "ani": 81.1436, "matched_fragments": 998, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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