{ "type": "genome", "identifier": "GCF_009829075.1", "organism": "Sphingobacterium composti", "title": "Sphingobacterium composti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009829075.1", "bioproject": "PRJNA224116", "biosample": "SAMN13495590", "wgs_master": "WUQZ00000000.1", "refseq_category": "reference genome", "taxid": "363260", "species_taxid": "363260", "organism_name": "Sphingobacterium composti", "infraspecific_name": "strain=KCTC 12578", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/03", "asm_name": "ASM982907v1", "asm_submitter": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "gbrs_paired_asm": "GCA_009829075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/829/075/GCF_009829075.1_ASM982907v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3613157", "genome_size_ungapped": "3613138", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009829075.1-RS_2025_01_12", "annotation_date": "2025-01-12", "total_gene_count": "3251", "protein_coding_gene_count": "3138", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-03", "dateModified": "2020-01-03", "datePublished": "2020-01-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007" ], "sample_taxid": [ "363260" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daejeon" ], "sample_host_location_id": [], "data_size": "1.024 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3613157", "Number of Sequences": "82", "Longest Sequences (bp)": "308006", "N50 (bp)": "112653", "Gap Ratio (%)": "0.000775", "GCcontent (%)": "35.2", "Number of CDSs": "3114", "Average Protein Length": "343.7", "Coding Ratio (%)": "88.9", "Number of rRNAs": "4", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007", "strain": "strain=KCTC 12578", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008520265.1", "gtdb_species": "s__Sphingobacterium cavernae", "ani": 84.0203, "matched_fragments": 735, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium", "ani_circumscription_radius": 96.1642, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009829085.1", "gtdb_species": "s__Sphingobacterium bovisgrunnientis", "ani": 83.9065, "matched_fragments": 745, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium", "ani_circumscription_radius": 96.1642, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011043515.1", "gtdb_species": "s__Sphingobacterium sp011043515", "ani": 82.0544, "matched_fragments": 615, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004342685.1", "gtdb_species": "s__Sphingobacterium alimentarium", "ani": 80.8265, "matched_fragments": 461, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009557615.1", "gtdb_species": "s__Sphingobacterium sp009557615", "ani": 77.9532, "matched_fragments": 154, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.219, "cell_length": 0.103, "doubling_h": null, "growth_tmp": 28.833, "optimum_tmp": 31.687, "optimum_ph": 7.192, "genome_size": 5015607.692, "gc_content": 38.627, "coding_genes": 3922.0, "rRNA16S_genes": 4.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.045, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sphingobacterium", "composti" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }