{
    "type": "genome",
    "identifier": "GCF_009829655.1",
    "organism": "Actinomyces marmotae",
    "title": "Actinomyces marmotae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "China CDC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009829655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12714487",
        "wgs_master": "VWPD00000000.1",
        "refseq_category": "na",
        "taxid": "2737173",
        "species_taxid": "2737173",
        "organism_name": "Actinomyces marmotae",
        "infraspecific_name": "strain=zg-325",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/03",
        "asm_name": "ASM982965v1",
        "asm_submitter": "China CDC",
        "gbrs_paired_asm": "GCA_009829655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/829/655/GCF_009829655.1_ASM982965v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2264595",
        "genome_size_ungapped": "2264595",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "48",
        "contig_count": "48",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-30",
        "total_gene_count": "1909",
        "protein_coding_gene_count": "1828",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-03",
    "dateModified": "2020-01-03",
    "datePublished": "2020-01-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces marmotae"
        ],
        "sample_taxid": [
            "2737173"
        ],
        "sample_host_organism": [
            "marmot"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.608 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2264595",
        "Number of Sequences": "48",
        "Longest Sequences (bp)": "219317",
        "N50 (bp)": "85615",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.7",
        "Number of CDSs": "1840",
        "Average Protein Length": "354.7",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Actinomyces marmotae",
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                "accession": "GCA_009829655.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
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            },
            {
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                "status": "below_threshold"
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani": 92.1804,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces denticolens",
                "strain": "strain=NCTC11490",
                "accession": "GCA_900445045.1",
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                "species_taxid": 52767,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_001995055.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0765,
                "matched_fragments": 661,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces timonensis",
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                "accession": "GCA_000295095.1",
                "taxid": 1288391,
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                "matched_fragments": 629,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia wutianyii",
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                "accession": "GCA_006349365.1",
                "taxid": 2585135,
                "species_taxid": 2585135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9947,
                "matched_fragments": 241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus cauae",
                "strain": "strain=MKL-02",
                "accession": "GCA_009707125.1",
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                "species_taxid": 2663847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3202,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus bolidensis",
                "strain": "strain=DSM 15745",
                "accession": "GCA_000426385.1",
                "taxid": 229480,
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                "relation_to_type": "type",
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                "ani": 77.2398,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_013177295.1",
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                "matched_fragments": 728,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 3,
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}