{ "type": "genome", "identifier": "GCF_009830105.1", "organism": "Microvirga makkahensis", "title": "Microvirga makkahensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, SYSU", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009830105.1", "bioproject": "PRJNA224116", "biosample": "SAMN13684129", "wgs_master": "WURB00000000.1", "refseq_category": "reference genome", "taxid": "1128670", "species_taxid": "1128670", "organism_name": "Microvirga makkahensis", "infraspecific_name": "strain=KCTC 23863", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/04", "asm_name": "ASM983010v1", "asm_submitter": "Sun Yat-sen University, SYSU", "gbrs_paired_asm": "GCA_009830105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/830/105/GCF_009830105.1_ASM983010v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5580646", "genome_size_ungapped": "5580646", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "94", "contig_count": "94", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009830105.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5372", "protein_coding_gene_count": "5120", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-04", "dateModified": "2020-01-04", "datePublished": "2020-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga makkahensis" ], "sample_taxid": [ "1128670" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia" ], "sample_host_location_id": [], "data_size": "1.567 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5580646", "Number of Sequences": "94", "Longest Sequences (bp)": "570901", "N50 (bp)": "257062", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "5357", "Average Protein Length": "291.5", "Coding Ratio (%)": "83.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga makkahensis", "strain": "strain=KCTC 23863", "accession": "GCA_009830105.1", "taxid": 1128670, "species_taxid": 1128670, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1812, "total_fragments": 1815, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 86.0622, "matched_fragments": 1159, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga vignae", "strain": "strain=BR3299", "accession": "GCA_001017175.1", "taxid": 1225564, "species_taxid": 1225564, "relation_to_type": "type", "validated": true, "ani": 83.7107, "matched_fragments": 1012, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga guangxiensis", "strain": "strain=CGMCC 1.7666", "accession": "GCA_900102135.1", "taxid": 549386, "species_taxid": 549386, "relation_to_type": "type", "validated": true, "ani": 83.5062, "matched_fragments": 965, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 82.6453, "matched_fragments": 799, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 82.3478, "matched_fragments": 899, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga mediterraneensis", "strain": "strain=Marseille-Q2068", "accession": "GCA_013520865.1", "taxid": 2754695, "species_taxid": 2754695, "relation_to_type": "type", "validated": true, "ani": 82.2252, "matched_fragments": 866, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 82.1078, "matched_fragments": 887, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga zambiensis", "strain": "strain=WSM3693", "accession": "GCA_016735695.1", "taxid": 1402137, "species_taxid": 1402137, "relation_to_type": "type", "validated": true, "ani": 81.8702, "matched_fragments": 898, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 81.8657, "matched_fragments": 851, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga soli", "strain": "strain=R491", "accession": "GCA_016734765.1", "taxid": 1854496, "species_taxid": 1854496, "relation_to_type": "type", "validated": true, "ani": 81.7955, "matched_fragments": 915, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 81.6829, "matched_fragments": 791, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga rosea", "strain": "strain=CGMCC1.16488", "accession": "GCA_020595095.1", "taxid": 2715425, "species_taxid": 2715425, "relation_to_type": "type", "validated": true, "ani": 79.6179, "matched_fragments": 600, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 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