{ "type": "genome", "identifier": "GCF_009830125.1", "organism": "Kangsaoukella pontilimi", "title": "Kangsaoukella pontilimi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009830125.1", "bioproject": "PRJNA224116", "biosample": "SAMN13631569", "wgs_master": "WUPT00000000.1", "refseq_category": "reference genome", "taxid": "2691042", "species_taxid": "2691042", "organism_name": "Kangsaoukella pontilimi", "infraspecific_name": "strain=GH1-50", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/04", "asm_name": "ASM983012v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_009830125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/830/125/GCF_009830125.1_ASM983012v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3685850", "genome_size_ungapped": "3685850", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009830125.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3747", "protein_coding_gene_count": "3683", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-04", "dateModified": "2020-01-04", "datePublished": "2020-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Kangsaoukella pontilimi" ], "sample_taxid": [ "2691042" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "1.022 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3685850", "Number of Sequences": "10", "Longest Sequences (bp)": "1843059", "N50 (bp)": "1843059", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "3725", "Average Protein Length": "301.7", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kangsaoukella pontilimi", "strain": "strain=GH1-50", "accession": "GCA_009830125.1", "taxid": 2691042, "species_taxid": 2691042, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1222, "total_fragments": 1223, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Silicimonas algicola", "strain": "strain=KC90", "accession": "GCA_003970735.1", "taxid": 1826607, "species_taxid": 1826607, "relation_to_type": "type", "validated": true, "ani": 78.6844, "matched_fragments": 460, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silicimonas algicola", "strain": "strain=DSM 103371", "accession": "GCA_003148765.1", "taxid": 1826607, "species_taxid": 1826607, "relation_to_type": "type", "validated": true, "ani": 78.6135, "matched_fragments": 468, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.3496, "matched_fragments": 408, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 78.3009, "matched_fragments": 314, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 78.2738, "matched_fragments": 403, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.2462, "matched_fragments": 424, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 78.241, "matched_fragments": 354, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.2391, "matched_fragments": 353, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.2213, "matched_fragments": 371, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 78.2206, "matched_fragments": 395, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 78.1088, "matched_fragments": 391, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola variabilis", "strain": "strain=CECT 8572", "accession": "GCA_014195545.1", "taxid": 1492771, "species_taxid": 1492771, "relation_to_type": "type", "validated": true, "ani": 78.1078, "matched_fragments": 346, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 78.0933, "matched_fragments": 393, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_000152805.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 78.0788, "matched_fragments": 360, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 78.0767, "matched_fragments": 391, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dinoroseobacter shibae", "strain": "strain=DFL 12", "accession": "GCA_000018145.1", "taxid": 215813, "species_taxid": 215813, "relation_to_type": "type", "validated": true, "ani": 78.0708, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 77.9794, "matched_fragments": 345, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.5646, "matched_fragments": 305, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hwanghaeicola aestuarii", "strain": "strain=DSM 22009", "accession": "GCA_003253995.1", "taxid": 568105, "species_taxid": 568105, "relation_to_type": "type", "validated": true, "ani": 77.547, "matched_fragments": 267, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lutimaris", "strain": "strain=CECT 8525", "accession": "GCA_003337565.1", "taxid": 1490030, "species_taxid": 1490030, "relation_to_type": "type", "validated": true, "ani": 77.5047, "matched_fragments": 288, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.3596, "matched_fragments": 270, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qingshengfaniella alkalisoli", "strain": "strain=LN3S51", "accession": "GCA_007855645.1", "taxid": 2599296, "species_taxid": 2599296, "relation_to_type": "type", "validated": true, "ani": 77.3035, "matched_fragments": 187, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.3026, "matched_fragments": 272, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009830125.1", "gtdb_species": "s__GH1-50 sp009830125", "ani": 100.0, "matched_fragments": 1222, "total_fragments": 1223, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__GH1-50", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018139985.1", "gtdb_species": "s__JAGSOU01 sp018139985", "ani": 78.6922, "matched_fragments": 420, 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