{ "type": "genome", "identifier": "GCF_009834025.1", "organism": "Epidermidibacterium keratini", "title": "Epidermidibacterium keratini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "COSMAX BTI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009834025.1", "bioproject": "PRJNA224116", "biosample": "SAMN13640879", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1891644", "species_taxid": "1891644", "organism_name": "Epidermidibacterium keratini", "infraspecific_name": "strain=EPI-7", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/08", "asm_name": "ASM983402v1", "asm_submitter": "COSMAX BTI", "gbrs_paired_asm": "GCA_009834025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/834/025/GCF_009834025.1_ASM983402v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4018808", "genome_size_ungapped": "4018808", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009834025.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3859", "protein_coding_gene_count": "3778", "non_coding_gene_count": "53", "pubmed_id": "29458473" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-08", "dateModified": "2020-01-08", "datePublished": "2020-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Epidermidibacterium keratini" ], "sample_taxid": [ "1891644" ], "sample_host_organism": [ "young woman" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.093 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4018808", "Number of Sequences": "1", "Longest Sequences (bp)": "4018808", "N50 (bp)": "4018808", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "3849", "Average Protein Length": "321.9", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cumulibacter soli", "strain": "strain=G-1", "accession": "GCA_004382795.1", "taxid": 2546344, "species_taxid": 2546344, "relation_to_type": "type", "validated": true, "ani": 78.1082, "matched_fragments": 292, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antricoccus suffuscus", "strain": "strain=DSM 100065", "accession": "GCA_003003235.1", "taxid": 1629062, "species_taxid": 1629062, "relation_to_type": "type", "validated": true, "ani": 77.8414, "matched_fragments": 341, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus obscurus", "strain": "strain=DSM 43160", "accession": "GCA_000025345.1", "taxid": 1861, "species_taxid": 1861, "relation_to_type": "type", "validated": true, "ani": 77.3257, "matched_fragments": 297, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter marinus", "strain": "strain=DSM 45201", "accession": "GCA_011758655.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 77.2984, "matched_fragments": 291, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter marinus", "strain": "strain=CGMCC 4.5581", "accession": "GCA_014645755.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 77.1872, "matched_fragments": 289, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora cianjurensis", "strain": "strain=DSM 45657", "accession": "GCA_003663795.1", "taxid": 585224, "species_taxid": 585224, "relation_to_type": "type", "validated": true, "ani": 77.1196, "matched_fragments": 266, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 76.9797, "matched_fragments": 303, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas taurus", "strain": "strain=P40-2", "accession": "GCA_012931845.1", "taxid": 2729175, "species_taxid": 2729175, "relation_to_type": "type", "validated": true, "ani": 76.9285, "matched_fragments": 169, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora terrae", "strain": "strain=DSM 44260", "accession": "GCA_900111175.1", "taxid": 155974, "species_taxid": 155974, "relation_to_type": "type", "validated": true, "ani": 76.9089, "matched_fragments": 269, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis australiensis", "strain": "strain=DSM 44671", "accession": "GCA_900119165.1", "taxid": 546364, "species_taxid": 546364, "relation_to_type": "type", "validated": true, "ani": 76.9012, "matched_fragments": 312, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 76.8862, "matched_fragments": 275, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 76.8582, "matched_fragments": 285, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola xanthii", "strain": "strain=11-183", "accession": "GCA_001921205.1", "taxid": 1912961, "species_taxid": 1912961, "relation_to_type": "type", "validated": true, "ani": 76.8491, "matched_fragments": 250, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 76.8379, "matched_fragments": 310, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora mooreana", "strain": "strain=DSM 45549", "accession": "GCA_000379065.1", "taxid": 999545, "species_taxid": 999545, "relation_to_type": "type", "validated": true, "ani": 76.8264, "matched_fragments": 144, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inaquosa", "strain": "strain=LB39", "accession": "GCA_003857055.1", "taxid": 2203716, "species_taxid": 2203716, "relation_to_type": "type", "validated": true, "ani": 76.8213, "matched_fragments": 218, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=JCM 30562", "accession": "GCA_007713745.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 76.8196, "matched_fragments": 280, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsukamurella asaccharolytica", "strain": "strain=HKU71", "accession": "GCA_007858435.1", "taxid": 2592067, "species_taxid": 2592067, "relation_to_type": "type", "validated": true, "ani": 76.7446, "matched_fragments": 216, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora shandongensis", "strain": "strain=CGMCC 4.3530", "accession": "GCA_900106995.1", "taxid": 418495, "species_taxid": 418495, "relation_to_type": "type", "validated": true, "ani": 76.7176, "matched_fragments": 314, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporichthya polymorpha", "strain": "strain=DSM 43042", "accession": "GCA_000384115.1", "taxid": 35751, "species_taxid": 35751, "relation_to_type": "type", "validated": true, "ani": 76.6991, "matched_fragments": 243, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora noduli", "strain": "strain=GUI43", "accession": "GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, "ani": 76.6574, "matched_fragments": 229, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fodinicola acaciae", "strain": "strain=GKU 173", "accession": "GCA_010993745.1", "taxid": 2681555, "species_taxid": 2681555, "relation_to_type": "type", "validated": true, "ani": 76.6462, "matched_fragments": 284, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 76.4779, "matched_fragments": 146, "total_fragments": 1339, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009834025.1", "gtdb_species": "s__Epidermidibacterium keratini", "ani": 100.0, "matched_fragments": 1339, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Antricoccaceae;g__Epidermidibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009602465.1", "gtdb_species": "s__Cumulibacter manganitolerans", "ani": 79.8897, "matched_fragments": 566, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Antricoccaceae;g__Cumulibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900292035.1", "gtdb_species": "s__Cumulibacter sp900292035", "ani": 79.5611, "matched_fragments": 491, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Antricoccaceae;g__Cumulibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004382795.1", "gtdb_species": "s__Cumulibacter soli", "ani": 78.1205, "matched_fragments": 291, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Antricoccaceae;g__Cumulibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003003235.1", "gtdb_species": "s__Antricoccus suffuscus", "ani": 77.8317, "matched_fragments": 342, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Antricoccaceae;g__Antricoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009557055.1", "gtdb_species": "s__Nocardioides sp009557055", "ani": 77.2102, "matched_fragments": 266, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900111175.1", "gtdb_species": "s__Actinokineospora terrae", "ani": 76.8839, "matched_fragments": 272, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinokineospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.61", "min_intra_species_ani": "95.61", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010993745.1", "gtdb_species": "s__Fodinicola acaciae", "ani": 76.661, "matched_fragments": 282, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__HKI-0501;g__Fodinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863255.1", "gtdb_species": "s__Planosporangium mesophilum", "ani": 76.6316, "matched_fragments": 226, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Planosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014267345.1", "gtdb_species": "s__Corynebacterium sp014267345", "ani": 76.1853, "matched_fragments": 52, "total_fragments": 1339, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Epidermidibacterium", "keratini" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }