{
    "type": "genome",
    "identifier": "GCF_009834785.1",
    "organism": "Natronorubrum halalkaliphilum",
    "title": "Natronorubrum halalkaliphilum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese academy of science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009834785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13632791",
        "wgs_master": "WUYX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2691917",
        "species_taxid": "2691917",
        "organism_name": "Natronorubrum halalkaliphilum",
        "infraspecific_name": "strain=JWXQ-INN-674",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/08",
        "asm_name": "ASM983478v1",
        "asm_submitter": "Chinese academy of science",
        "gbrs_paired_asm": "GCA_009834785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/834/785/GCF_009834785.1_ASM983478v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4556774",
        "genome_size_ungapped": "4556507",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "73",
        "contig_count": "73",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009834785.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "4402",
        "protein_coding_gene_count": "4266",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-08",
    "dateModified": "2020-01-08",
    "datePublished": "2020-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natronorubrum halalkaliphilum"
        ],
        "sample_taxid": [
            "2691917"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Inner mongolia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.268 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4556774",
        "Number of Sequences": "73",
        "Longest Sequences (bp)": "291861",
        "N50 (bp)": "148367",
        "Gap Ratio (%)": "0.005859",
        "GCcontent (%)": "62.5",
        "Number of CDSs": "4329",
        "Average Protein Length": "291.5",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Natronorubrum halalkaliphilum",
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                "species_taxid": 2691917,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1481,
                "total_fragments": 1485,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronorubrum halophilum",
                "strain": "strain=SHR37",
                "accession": "GCA_003670115.1",
                "taxid": 1702106,
                "species_taxid": 1702106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.002,
                "matched_fragments": 902,
                "total_fragments": 1485,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum tibetense",
                "strain": "strain=GA33",
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                "species_taxid": 63128,
                "relation_to_type": "type",
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                "ani": 82.8173,
                "matched_fragments": 985,
                "total_fragments": 1485,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum tibetense",
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                "accession": "GCA_000337235.1",
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                "species_taxid": 63128,
                "relation_to_type": "type",
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                "ani": 82.7634,
                "matched_fragments": 967,
                "total_fragments": 1485,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena alkaliphila",
                "strain": "strain=KZCA68",
                "accession": "GCA_017352155.2",
                "taxid": 2816475,
                "species_taxid": 2816475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2736,
                "matched_fragments": 851,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena salifodinae",
                "strain": "strain=ZY19",
                "accession": "GCA_003977755.1",
                "taxid": 2675099,
                "species_taxid": 2675099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9572,
                "matched_fragments": 871,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum aibiense",
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                "accession": "GCA_009392895.1",
                "taxid": 348826,
                "species_taxid": 348826,
                "relation_to_type": "type",
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                "matched_fragments": 795,
                "total_fragments": 1485,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema altunense",
                "strain": "strain=JCM 12890",
                "accession": "GCA_000337155.1",
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                "species_taxid": 222984,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema altunense",
                "strain": "strain=AJ2",
                "accession": "GCA_000731985.1",
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                "species_taxid": 222984,
                "relation_to_type": "type",
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                "ani": 80.8367,
                "matched_fragments": 693,
                "total_fragments": 1485,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema pallidum",
                "strain": "strain=DSM 3751",
                "accession": "GCA_000337615.1",
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                "species_taxid": 69527,
                "relation_to_type": "type",
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                "ani": 80.6634,
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                "total_fragments": 1485,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_009834785.1",
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                "total_fragments": 1485,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCA_003670115.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "halalkaliphilum"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}