{ "type": "genome", "identifier": "GCF_009834875.1", "organism": "Hufsiella arboris", "title": "Hufsiella arboris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankuk University of Foreign Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009834875.1", "bioproject": "PRJNA224116", "biosample": "SAMN13183220", "wgs_master": "WVHT00000000.1", "refseq_category": "reference genome", "taxid": "2695275", "species_taxid": "2695275", "organism_name": "Hufsiella arboris", "infraspecific_name": "strain=HMF7647", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/08", "asm_name": "ASM983487v1", "asm_submitter": "Hankuk University of Foreign Studies", "gbrs_paired_asm": "GCA_009834875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/834/875/GCF_009834875.1_ASM983487v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4801297", "genome_size_ungapped": "4801297", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009834875.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4160", "protein_coding_gene_count": "4102", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-08", "dateModified": "2020-01-08", "datePublished": "2020-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Hufsiella arboris" ], "sample_taxid": [ "2695275" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yong-in" ], "sample_host_location_id": [], "data_size": "1.365 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4801297", "Number of Sequences": "56", "Longest Sequences (bp)": "841135", "N50 (bp)": "501702", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.3", "Number of CDSs": "4025", "Average Protein Length": "350.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcticibacter tournemirensis", "strain": "strain=DSM 23085", "accession": "GCA_006716645.1", "taxid": 699437, "species_taxid": 699437, "relation_to_type": "type", "validated": true, "ani": 78.1417, "matched_fragments": 76, 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}, { "organism_name": "Pedobacter fastidiosus", "strain": "strain=CCM 8938", "accession": "GCA_014306625.1", "taxid": 2765361, "species_taxid": 2765361, "relation_to_type": "type", "validated": true, "ani": 77.2041, "matched_fragments": 60, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 77.1371, "matched_fragments": 75, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 77.067, "matched_fragments": 65, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.0451, "matched_fragments": 69, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter frigoris", "strain": "strain=RP-3-15", "accession": "GCA_005116445.1", "taxid": 2571272, "species_taxid": 2571272, "relation_to_type": "type", "validated": true, "ani": 77.0362, "matched_fragments": 59, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter endophyticus", "strain": "strain=RS1", "accession": "GCA_003351025.1", "taxid": 2675003, "species_taxid": 2675003, "relation_to_type": "type", "validated": true, "ani": 76.9259, "matched_fragments": 90, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", 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"type", "validated": true, "ani": 76.7884, "matched_fragments": 86, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 76.781, "matched_fragments": 71, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorans", "strain": "strain=Gsoil 3017", "accession": "GCA_007971025.1", "taxid": 398053, "species_taxid": 398053, "relation_to_type": "type", "validated": true, "ani": 76.7434, "matched_fragments": 67, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=SA3-7", "accession": "GCA_002355435.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 76.7266, "matched_fragments": 74, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter yixingensis", "strain": "strain=DSM 26809", "accession": "GCA_003050755.1", "taxid": 1295612, "species_taxid": 1295612, "relation_to_type": "type", "validated": true, "ani": 76.7122, "matched_fragments": 67, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 76.3603, "matched_fragments": 96, "total_fragments": 1576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 76.3397, "matched_fragments": 66, 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