{ "type": "genome", "identifier": "GCF_009835145.1", "organism": "Profundibacterium mesophilum KAUST100406-0324", "title": "Profundibacterium mesophilum KAUST100406-0324", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CBRC, KAUST", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009835145.1", "bioproject": "PRJNA224116", "biosample": "SAMN13781051", "wgs_master": "APKE00000000.1", "refseq_category": "reference genome", "taxid": "1037889", "species_taxid": "1258573", "organism_name": "Profundibacterium mesophilum KAUST100406-0324", "infraspecific_name": "strain=KAUST100406-0324", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/09", "asm_name": "ASM983514v1", "asm_submitter": "CBRC, KAUST", "gbrs_paired_asm": "GCA_009835145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/835/145/GCF_009835145.1_ASM983514v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3388134", "genome_size_ungapped": "3388134", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "130", "contig_count": "130", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009835145.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "3333", "protein_coding_gene_count": "3222", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-09", "dateModified": "2020-01-09", "datePublished": "2020-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Profundibacterium mesophilum KAUST100406-0324" ], "sample_taxid": [ "1037889" ], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.6397, "matched_fragments": 337, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia marisminoris", "strain": "strain=CECT 7066", "accession": "GCA_900172315.1", "taxid": 315423, "species_taxid": 315423, "relation_to_type": "type", "validated": true, "ani": 78.6222, "matched_fragments": 383, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia saemankumensis", "strain": "strain=DSM 100565", "accession": "GCA_900141735.1", "taxid": 1447782, "species_taxid": 1447782, "relation_to_type": "type", "validated": true, "ani": 78.5358, "matched_fragments": 397, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hwanghaeicola aestuarii", "strain": "strain=DSM 22009", "accession": "GCA_003253995.1", "taxid": 568105, "species_taxid": 568105, "relation_to_type": "type", "validated": true, "ani": 78.4275, "matched_fragments": 393, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceaniglobus trochenteri", "strain": "strain=G4", "accession": "GCA_020529025.1", "taxid": 2763260, "species_taxid": 2763260, "relation_to_type": "type", "validated": true, "ani": 78.3729, "matched_fragments": 404, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.3526, "matched_fragments": 401, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia rufa", "strain": "strain=MOLA 401", "accession": "GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 78.3029, "matched_fragments": 400, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 78.264, "matched_fragments": 352, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.2553, "matched_fragments": 363, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus aestuarii", "strain": "strain=CECT 9025", "accession": "GCA_003217255.1", 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"below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009835145.1", "gtdb_species": "s__Profundibacterium mesophilum", "ani": 100.0, "matched_fragments": 1083, "total_fragments": 1085, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Profundibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002723615.1", "gtdb_species": "s__Limimaricola cinnabarinus_B", "ani": 79.3612, "matched_fragments": 480, "total_fragments": 1085, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Limimaricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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