{ "type": "genome", "identifier": "GCF_009846745.1", "organism": "Alcanivorax xiamenensis", "title": "Alcanivorax xiamenensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009846745.1", "bioproject": "PRJNA224116", "biosample": "SAMN13821724", "wgs_master": "AQPF00000000.1", "refseq_category": "reference genome", "taxid": "1177156", "species_taxid": "1177156", "organism_name": "Alcanivorax xiamenensis", "infraspecific_name": "strain=6-D-6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/10", "asm_name": "ASM984674v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_009846745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/846/745/GCF_009846745.1_ASM984674v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4777343", "genome_size_ungapped": "4777343", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "122", "contig_count": "122", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009846745.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4366", "protein_coding_gene_count": "4283", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-10", "dateModified": "2020-01-10", "datePublished": "2020-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax xiamenensis" ], "sample_taxid": [ "1177156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiamen City" ], "sample_host_location_id": [], "data_size": "1.346 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4777343", "Number of Sequences": "122", "Longest Sequences (bp)": "336833", "N50 (bp)": "87024", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.4", "Number of CDSs": "4322", "Average Protein Length": "324.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "2", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax xenomutans", "strain": "strain=JC109", "accession": "GCA_900217905.1", "taxid": 1094342, "species_taxid": 1094342, 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90.4695, "matched_fragments": 1322, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 80.9281, "matched_fragments": 701, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 80.9036, "matched_fragments": 645, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 80.6034, "matched_fragments": 714, 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"below_threshold" }, { "organism_name": "Acidihalobacter aeolianus", "strain": "strain=V6", "accession": "GCA_001753165.1", "taxid": 2792603, "species_taxid": 2792603, "relation_to_type": "type", "validated": true, "ani": 75.4878, "matched_fragments": 56, "total_fragments": 1530, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004360225.1", "gtdb_species": "s__Alcanivorax sp004360225", "ani": 99.1197, "matched_fragments": 1388, "total_fragments": 1530, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900217905.1", "gtdb_species": 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Alcanivorax", "xiamenensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }