{
    "type": "genome",
    "identifier": "GCF_009846865.1",
    "organism": "Puerhibacterium puerhi",
    "title": "Puerhibacterium puerhi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Beijing University of Chemical Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009846865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13697519",
        "wgs_master": "WUWN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2692623",
        "species_taxid": "2692623",
        "organism_name": "Puerhibacterium puerhi",
        "infraspecific_name": "strain=TLY-12",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/10",
        "asm_name": "ASM984686v1",
        "asm_submitter": "Beijing University of Chemical Technology",
        "gbrs_paired_asm": "GCA_009846865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/846/865/GCF_009846865.1_ASM984686v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3907146",
        "genome_size_ungapped": "3907096",
        "gc_percent": "75.000000",
        "replicon_count": "0",
        "scaffold_count": "94",
        "contig_count": "94",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009846865.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3705",
        "protein_coding_gene_count": "3581",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-10",
    "dateModified": "2020-01-10",
    "datePublished": "2020-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Puerhibacterium puerhi"
        ],
        "sample_taxid": [
            "2692623"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.014 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3907146",
        "Number of Sequences": "94",
        "Longest Sequences (bp)": "364742",
        "N50 (bp)": "90183",
        "Gap Ratio (%)": "0.001280",
        "GCcontent (%)": "75.0",
        "Number of CDSs": "3546",
        "Average Protein Length": "323.3",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Isoptericola jiangsuensis",
                "strain": "strain=DSM 21863",
                "accession": "GCA_002563715.1",
                "taxid": 548579,
                "species_taxid": 548579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8426,
                "matched_fragments": 677,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Isoptericola dokdonensis",
                "strain": "strain=DS-3",
                "accession": "GCA_001636295.1",
                "taxid": 372663,
                "species_taxid": 372663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7753,
                "matched_fragments": 681,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Isoptericola chiayiensis",
                "strain": "strain=KCTC 19740",
                "accession": "GCA_013149805.1",
                "taxid": 579446,
                "species_taxid": 579446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7218,
                "matched_fragments": 658,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Isoptericola sediminis",
                "strain": "strain=JC619",
                "accession": "GCA_013085345.1",
                "taxid": 2733572,
                "species_taxid": 2733572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6738,
                "matched_fragments": 605,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Promicromonospora citrea",
                "strain": "strain=ATCC 15908",
                "accession": "GCA_013004695.1",
                "taxid": 43677,
                "species_taxid": 43677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6699,
                "matched_fragments": 669,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Promicromonospora citrea",
                "strain": "strain=JCM 3051",
                "accession": "GCA_014647735.1",
                "taxid": 43677,
                "species_taxid": 43677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4348,
                "matched_fragments": 727,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosimicrobium funkei",
                "strain": "strain=NBRC 104118",
                "accession": "GCA_001570825.1",
                "taxid": 264251,
                "species_taxid": 264251,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.1385,
                "matched_fragments": 677,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosimicrobium funkei",
                "strain": "strain=JCM 14302",
                "accession": "GCA_004519295.1",
                "taxid": 264251,
                "species_taxid": 264251,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.1364,
                "matched_fragments": 699,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminihabitans luteus",
                "strain": "strain=NBRC 108568",
                "accession": "GCA_016863455.1",
                "taxid": 1138585,
                "species_taxid": 1138585,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9999,
                "matched_fragments": 577,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminihabitans luteus",
                "strain": "strain=DSM 25478",
                "accession": "GCA_002797595.1",
                "taxid": 1138585,
                "species_taxid": 1138585,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9903,
                "matched_fragments": 585,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Promicromonospora umidemergens",
                "strain": "strain=DSM 22081",
                "accession": "GCA_024171995.1",
                "taxid": 629679,
                "species_taxid": 629679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8491,
                "matched_fragments": 652,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosimicrobium marinum",
                "strain": "strain=NBRC 110994",
                "accession": "GCA_020551945.1",
                "taxid": 1638992,
                "species_taxid": 1638992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8286,
                "matched_fragments": 654,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosimicrobium arenosum",
                "strain": "strain=KCTC 49039",
                "accession": "GCA_014837295.1",
                "taxid": 2708133,
                "species_taxid": 2708133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7023,
                "matched_fragments": 587,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia rustica",
                "strain": "strain=Sa4CUA1",
                "accession": "GCA_014836555.1",
                "taxid": 2762237,
                "species_taxid": 2762237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4603,
                "matched_fragments": 583,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia douganii",
                "strain": "strain=Sa1BUA8",
                "accession": "GCA_015142735.1",
                "taxid": 2762210,
                "species_taxid": 2762210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4438,
                "matched_fragments": 585,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myceligenerans salitolerans",
                "strain": "strain=XHU 5031",
                "accession": "GCA_017349295.1",
                "taxid": 1230528,
                "species_taxid": 1230528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2973,
                "matched_fragments": 557,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=NBRC 16055",
                "accession": "GCA_007989225.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.2672,
                "matched_fragments": 609,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myceligenerans indicum",
                "strain": "strain=I2",
                "accession": "GCA_016742955.1",
                "taxid": 2593663,
                "species_taxid": 2593663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.265,
                "matched_fragments": 560,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=DSM 9581",
                "accession": "GCA_014201095.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.2586,
                "matched_fragments": 635,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1263,
                "matched_fragments": 571,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sanguibacter keddieii",
                "strain": "strain=DSM 10542",
                "accession": "GCA_000024925.1",
                "taxid": 60920,
                "species_taxid": 60920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.07,
                "matched_fragments": 557,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas gilvus",
                "strain": "strain=ATCC 13127",
                "accession": "GCA_000218545.1",
                "taxid": 11,
                "species_taxid": 11,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8263,
                "matched_fragments": 536,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea solisilvae",
                "strain": "strain=KACC 19191",
                "accession": "GCA_016464425.1",
                "taxid": 2072922,
                "species_taxid": 2072922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7611,
                "matched_fragments": 591,
                "total_fragments": 1258,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009846865.1",
                "gtdb_species": "s__Xylanimonas puerhi",
                "ani": 100.0,
                "matched_fragments": 1249,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001750215.1",
                "gtdb_species": "s__Xylanimonas variabilis_A",
                "ani": 90.1469,
                "matched_fragments": 743,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003244315.1",
                "gtdb_species": "s__Xylanimonas oleitrophica",
                "ani": 82.9174,
                "matched_fragments": 730,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000215105.1",
                "gtdb_species": "s__Isoptericola variabilis_A",
                "ani": 82.1653,
                "matched_fragments": 711,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009783295.1",
                "gtdb_species": "s__Xylanimonas sp009783295",
                "ani": 81.883,
                "matched_fragments": 683,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004216535.1",
                "gtdb_species": "s__Xylanimonas ulmi",
                "ani": 81.8321,
                "matched_fragments": 678,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004135385.1",
                "gtdb_species": "s__Xylanimonas sp004135385",
                "ani": 81.7306,
                "matched_fragments": 720,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004135345.1",
                "gtdb_species": "s__Xylanimonas allomyrinae",
                "ani": 81.6838,
                "matched_fragments": 667,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000024965.1",
                "gtdb_species": "s__Xylanimonas cellulosilytica",
                "ani": 81.565,
                "matched_fragments": 690,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002563715.1",
                "gtdb_species": "s__Isoptericola jiangsuensis",
                "ani": 80.7762,
                "matched_fragments": 684,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017349295.1",
                "gtdb_species": "s__Myceligenerans salitolerans",
                "ani": 79.306,
                "matched_fragments": 556,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Myceligenerans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016742955.1",
                "gtdb_species": "s__Myceligenerans indicum",
                "ani": 79.2821,
                "matched_fragments": 558,
                "total_fragments": 1258,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Myceligenerans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Puerhibacterium",
        "puerhi"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}