{ "type": "genome", "identifier": "GCF_009848505.1", "organism": "Roseomonas harenae", "title": "Roseomonas harenae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009848505.1", "bioproject": "PRJNA224116", "biosample": "SAMN13696933", "wgs_master": "WWDL00000000.1", "refseq_category": "reference genome", "taxid": "2692566", "species_taxid": "2692566", "organism_name": "Roseomonas harenae", "infraspecific_name": "strain=CPCC 101081", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/10", "asm_name": "ASM984850v1", "asm_submitter": "Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_009848505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/848/505/GCF_009848505.1_ASM984850v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5303199", "genome_size_ungapped": "5302933", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "126", "contig_count": "126", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009848505.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "5098", "protein_coding_gene_count": "4885", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-10", "dateModified": "2020-01-10", "datePublished": "2020-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas harenae" ], "sample_taxid": [ "2692566" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Neimenggu, Badain Jaran Desert" ], "sample_host_location_id": [], "data_size": "1.454 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5303199", "Number of Sequences": "126", "Longest Sequences (bp)": "469248", "N50 (bp)": "110178", "Gap Ratio (%)": "0.005016", "GCcontent (%)": "68.7", "Number of CDSs": "5075", "Average Protein Length": "308.0", "Coding Ratio (%)": "88.4", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas harenae", "strain": "strain=CPCC 101081", "accession": "GCA_009848505.1", "taxid": 2692566, 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"below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 78.2791, "matched_fragments": 583, "total_fragments": 1710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 78.2107, "matched_fragments": 561, "total_fragments": 1710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 78.1864, "matched_fragments": 528, "total_fragments": 1710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas 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