{ "type": "genome", "identifier": "GCF_009856625.1", "organism": "Aquitalea denitrificans", "title": "Aquitalea denitrificans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009856625.1", "bioproject": "PRJNA224116", "biosample": "SAMN13707219", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "519081", "species_taxid": "519081", "organism_name": "Aquitalea denitrificans", "infraspecific_name": "strain=5YN1-3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/11", "asm_name": "ASM985662v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_009856625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/856/625/GCF_009856625.1_ASM985662v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4502301", "genome_size_ungapped": "4502301", "gc_percent": "59.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009856625.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4201", "protein_coding_gene_count": "4057", "non_coding_gene_count": "126", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-11", "dateModified": "2020-01-11", "datePublished": "2020-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquitalea denitrificans" ], "sample_taxid": [ "519081" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.256 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4502301", "Number of Sequences": "1", "Longest Sequences (bp)": "4502301", "N50 (bp)": "4502301", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.8", "Number of CDSs": "4109", "Average Protein Length": "320.8", "Coding Ratio (%)": "87.8", "Number of rRNAs": "25", "Number of tRNAs": "99", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquitalea denitrificans", "strain": "strain=5YN1-3", "accession": "GCA_009856625.1", "taxid": 519081, "species_taxid": 519081, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1497, "total_fragments": 1500, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquitalea pelogenes", "strain": "strain=CCM 7557", "accession": "GCA_001515305.1", "taxid": 1293573, "species_taxid": 1293573, "relation_to_type": "type", "validated": true, "ani": 89.1472, "matched_fragments": 1173, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquitalea magnusonii", "strain": "strain=DSM 25134", "accession": "GCA_003202035.1", "taxid": 332411, "species_taxid": 332411, "relation_to_type": "suspected-type", "validated": true, "ani": 87.3105, "matched_fragments": 1133, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquitalea aquatilis", "strain": "strain=THG-DN7.12", "accession": "GCA_005155025.1", "taxid": 1537400, "species_taxid": 1537400, "relation_to_type": "type", "validated": true, "ani": 86.7173, "matched_fragments": 1126, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium amazonense", "strain": "strain=DSM 26508", "accession": "GCA_001855565.1", "taxid": 1382803, "species_taxid": 1382803, "relation_to_type": "type", "validated": true, "ani": 80.4813, "matched_fragments": 592, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sphagni", "strain": "strain=IIBBL 14B-1", "accession": "GCA_001855555.1", "taxid": 1903179, "species_taxid": 1903179, "relation_to_type": "type", "validated": true, "ani": 80.4806, "matched_fragments": 571, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 80.475, "matched_fragments": 625, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium piscinae", "strain": 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