{
    "type": "genome",
    "identifier": "GCF_009856865.1",
    "organism": "Solidesulfovibrio aerotolerans",
    "title": "Solidesulfovibrio aerotolerans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tomsk State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009856865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13734944",
        "wgs_master": "WVUD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "295255",
        "species_taxid": "295255",
        "organism_name": "Solidesulfovibrio aerotolerans",
        "infraspecific_name": "strain=DSM 16695",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/11",
        "asm_name": "ASM985686v1",
        "asm_submitter": "Tomsk State University",
        "gbrs_paired_asm": "GCA_009856865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/856/865/GCF_009856865.1_ASM985686v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4616119",
        "genome_size_ungapped": "4616119",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "162",
        "contig_count": "162",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009856865.1-RS_2024_08_07",
        "annotation_date": "2024-08-07",
        "total_gene_count": "4163",
        "protein_coding_gene_count": "4036",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-11",
    "dateModified": "2020-01-11",
    "datePublished": "2020-01-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Solidesulfovibrio aerotolerans"
        ],
        "sample_taxid": [
            "295255"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not available"
        ],
        "sample_host_location_id": [],
        "data_size": "1.299 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4616119",
        "Number of Sequences": "162",
        "Longest Sequences (bp)": "379465",
        "N50 (bp)": "87534",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.6",
        "Number of CDSs": "4088",
        "Average Protein Length": "319.8",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Solidesulfovibrio aerotolerans",
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                "species_taxid": 295255,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1466,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Solidesulfovibrio carbinolicus",
                "strain": "strain=DSM 3852",
                "accession": "GCA_004135975.1",
                "taxid": 296842,
                "species_taxid": 296842,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1968,
                "matched_fragments": 1024,
                "total_fragments": 1473,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solidesulfovibrio magneticus",
                "strain": "strain=RS-1",
                "accession": "GCA_000010665.1",
                "taxid": 184917,
                "species_taxid": 184917,
                "relation_to_type": "type",
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                "ani": 82.9223,
                "matched_fragments": 1055,
                "total_fragments": 1473,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio carbinoliphilus subsp. oakridgensis",
                "strain": "strain=FW-101-2B",
                "accession": "GCA_000177215.2",
                "taxid": 694327,
                "species_taxid": 345370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1393,
                "matched_fragments": 849,
                "total_fragments": 1473,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solidesulfovibrio fructosivorans",
                "strain": "strain=JJ",
                "accession": "GCA_000179555.1",
                "taxid": 878,
                "species_taxid": 878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5982,
                "matched_fragments": 774,
                "total_fragments": 1473,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solidesulfovibrio alcoholivorans",
                "strain": "strain=DSM 5433",
                "accession": "GCA_000702665.1",
                "taxid": 81406,
                "species_taxid": 81406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3924,
                "matched_fragments": 842,
                "total_fragments": 1473,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009856865.1",
                "gtdb_species": "s__Solidesulfovibrio aerotolerans",
                "ani": 99.9999,
                "matched_fragments": 1466,
                "total_fragments": 1473,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000526455.1",
                "gtdb_species": "s__Solidesulfovibrio magneticus_C",
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                "matched_fragments": 1097,
                "total_fragments": 1473,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001936595.1",
                "gtdb_species": "s__Solidesulfovibrio sp001936595",
                "ani": 85.3478,
                "matched_fragments": 1043,
                "total_fragments": 1473,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000801335.2",
                "gtdb_species": "s__Solidesulfovibrio sp000801335",
                "ani": 84.9118,
                "matched_fragments": 1088,
                "total_fragments": 1473,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_004135975.1",
                "gtdb_species": "s__Solidesulfovibrio carbinolicus",
                "ani": 83.1937,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_000307955.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000010665.1",
                "gtdb_species": "s__Solidesulfovibrio magneticus",
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                "matched_fragments": 1056,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002482565.1",
                "gtdb_species": "s__Solidesulfovibrio magneticus_B",
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                "matched_fragments": 890,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
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        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Solidesulfovibrio",
        "aerotolerans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}