{ "type": "genome", "identifier": "GCF_009857245.1", "organism": "Vibrio tetraodonis subsp. pristinus", "title": "Vibrio tetraodonis subsp. pristinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Southern Oregon Univeristy", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009857245.1", "bioproject": "PRJNA224116", "biosample": "SAMN13735740", "wgs_master": "WWEU00000000.1", "refseq_category": "na", "taxid": "2695891", "species_taxid": "2231647", "organism_name": "Vibrio tetraodonis subsp. pristinus", "infraspecific_name": "strain=OCN044", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/12", "asm_name": "ASM985724v1", "asm_submitter": "Southern Oregon Univeristy", "gbrs_paired_asm": "GCA_009857245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/857/245/GCF_009857245.1_ASM985724v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4613523", "genome_size_ungapped": "4613234", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009857245.1-RS_2024_08_31", "annotation_date": "2024-08-31", "total_gene_count": "4299", "protein_coding_gene_count": "4145", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-12", "dateModified": "2020-01-12", "datePublished": "2020-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio tetraodonis subsp. pristinus" ], "sample_taxid": [ "2695891" ], "sample_host_organism": [ "Acropora cytherea" ], "sample_host_organism_id": [], "sample_host_disease": [ "Healthy" ], "sample_host_disease_id": [], "sample_host_location": [ "Line Islands: Palmyra Atoll" ], "sample_host_location_id": [], "data_size": "1.317 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4613523", "Number of Sequences": "30", "Longest Sequences (bp)": "1180835", "N50 (bp)": "666375", "Gap Ratio (%)": "0.006264", "GCcontent (%)": "42.4", "Number of CDSs": "4153", "Average Protein Length": "319.7", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "87", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio aquimaris", "strain": "strain=THAF100", "accession": "GCA_009363415.1", "taxid": 2587862, "species_taxid": 2587862, "relation_to_type": "type", "validated": true, "ani": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio bivalvicida", "strain": "strain=605", "accession": "GCA_001399455.2", "taxid": 1276888, "species_taxid": 1276888, "relation_to_type": "type", "validated": true, "ani": 79.6135, "matched_fragments": 317, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 79.5185, "matched_fragments": 332, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000772105.1", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4426, "matched_fragments": 353, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3458, "matched_fragments": 338, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.3282, "matched_fragments": 307, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.2545, "matched_fragments": 306, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hippocampi", "strain": "strain=CECT 8226", "accession": "GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 79.0155, "matched_fragments": 170, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 78.888, "matched_fragments": 185, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marinisediminis", "strain": "strain=404", "accession": "GCA_014050145.1", "taxid": 2758441, "species_taxid": 2758441, "relation_to_type": "type", "validated": true, "ani": 78.7413, "matched_fragments": 255, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sonorensis", "strain": "strain=CAIM 1076", "accession": "GCA_001854765.1", "taxid": 1004316, "species_taxid": 1004316, 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