{ "type": "genome", "identifier": "GCF_009857475.1", "organism": "Pseudoduganella guangdongensis", "title": "Pseudoduganella guangdongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009857475.1", "bioproject": "PRJNA224116", "biosample": "SAMN13678860", "wgs_master": "WWCJ00000000.1", "refseq_category": "reference genome", "taxid": "2692179", "species_taxid": "2692179", "organism_name": "Pseudoduganella guangdongensis", "infraspecific_name": "strain=DS3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/12", "asm_name": "ASM985747v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_009857475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/857/475/GCF_009857475.1_ASM985747v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5722793", "genome_size_ungapped": "5722793", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009857475.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "5436", "protein_coding_gene_count": "5283", "non_coding_gene_count": "114", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-12", "dateModified": "2020-01-12", "datePublished": "2020-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoduganella guangdongensis" ], "sample_taxid": [ "2692179" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.584 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5722793", "Number of Sequences": "96", "Longest Sequences (bp)": "514508", "N50 (bp)": "268570", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "5239", "Average Protein Length": "335.1", "Coding Ratio (%)": "92.0", "Number of rRNAs": "2", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoduganella guangdongensis", "strain": "strain=DS3", "accession": "GCA_009857475.1", "taxid": 2692179, "species_taxid": 2692179, 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"status": "below_threshold" }, { "organism_name": "Pseudoduganella flava", "strain": "strain=CGMCC 1.10685", "accession": "GCA_007830495.1", "taxid": 871742, "species_taxid": 871742, "relation_to_type": "type", "validated": true, "ani": 80.523, "matched_fragments": 1031, "total_fragments": 1880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella lutea", "strain": "strain=DSM 17473", "accession": "GCA_004209755.1", "taxid": 321985, "species_taxid": 321985, "relation_to_type": "type", "validated": true, "ani": 80.5113, "matched_fragments": 952, "total_fragments": 1880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 80.4998, "matched_fragments": 804, "total_fragments": 1880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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