{ "type": "genome", "identifier": "GCF_009857745.1", "organism": "Thalassovita mangrovi", "title": "Thalassovita mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of Life Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009857745.1", "bioproject": "PRJNA224116", "biosample": "SAMN13680024", "wgs_master": "WWEN00000000.1", "refseq_category": "reference genome", "taxid": "2692236", "species_taxid": "2692236", "organism_name": "Thalassovita mangrovi", "infraspecific_name": "strain=GS-10", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/12", "asm_name": "ASM985774v1", "asm_submitter": "School of Life Sciences", "gbrs_paired_asm": "GCA_009857745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/857/745/GCF_009857745.1_ASM985774v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4156728", "genome_size_ungapped": "4156728", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009857745.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4026", "protein_coding_gene_count": "3964", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-12", "dateModified": "2020-01-12", "datePublished": "2020-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassovita mangrovi" ], "sample_taxid": [ "2692236" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi Province" ], "sample_host_location_id": [], "data_size": "1.142 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4156728", "Number of Sequences": "36", "Longest Sequences (bp)": "994080", "N50 (bp)": "430590", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "3962", "Average Protein Length": "313.8", "Coding Ratio (%)": "89.7", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1371, "total_fragments": 1372, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 88.893, "matched_fragments": 1058, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius gelatinovorus", "strain": "strain=DSM 5887", "accession": "GCA_900111045.1", "taxid": 53501, "species_taxid": 53501, "relation_to_type": "type", "validated": true, "ani": 82.5144, "matched_fragments": 888, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius gelatinovorus", "strain": "strain=CECT 4357", "accession": "GCA_001458355.1", "taxid": 53501, "species_taxid": 53501, "relation_to_type": "type", "validated": true, "ani": 82.4177, "matched_fragments": 883, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 79.5479, "matched_fragments": 564, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 79.3792, "matched_fragments": 535, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius autumnalis", "strain": "strain=CECT 5118", "accession": "GCA_001458255.1", "taxid": 2072972, "species_taxid": 2072972, "relation_to_type": "type", "validated": true, "ani": 79.164, "matched_fragments": 631, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mediterraneus", "strain": "strain=CECT 5383", 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