{ "type": "genome", "identifier": "GCF_009857845.1", "organism": "Brevibacterium rongguiense", "title": "Brevibacterium rongguiense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009857845.1", "bioproject": "PRJNA224116", "biosample": "SAMN13716136", "wgs_master": "WWEQ00000000.1", "refseq_category": "reference genome", "taxid": "2695267", "species_taxid": "2695267", "organism_name": "Brevibacterium rongguiense", "infraspecific_name": "strain=5221", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/12", "asm_name": "ASM985784v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_009857845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/857/845/GCF_009857845.1_ASM985784v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3117581", "genome_size_ungapped": "3117581", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "179", "contig_count": "179", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009857845.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2845", "protein_coding_gene_count": "2685", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-12", "dateModified": "2020-01-12", "datePublished": "2020-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium rongguiense" ], "sample_taxid": [ "2695267" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: West Wenming Road, Shunde, Foshan, Guangdong" ], "sample_host_location_id": [], "data_size": "0.840 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3117581", "Number of Sequences": "179", "Longest Sequences (bp)": "106915", "N50 (bp)": "42621", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "2675", "Average Protein Length": "332.2", "Coding Ratio (%)": "85.5", "Number of rRNAs": "4", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium rongguiense", "strain": "strain=5221", "accession": "GCA_009857845.1", "taxid": 2695267, "species_taxid": 2695267, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 958, "total_fragments": 966, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacterium ihuae", "strain": "strain=CV3", "accession": "GCA_900184225.1", "taxid": 1631743, "species_taxid": 1631743, "relation_to_type": "type", "validated": true, "ani": 80.1424, "matched_fragments": 471, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium luteolum", "strain": "strain=DSM 15022", "accession": "GCA_016907415.1", "taxid": 199591, "species_taxid": 199591, "relation_to_type": "type", "validated": true, "ani": 79.636, "matched_fragments": 384, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium luteolum", "strain": "strain=CCUG 46604", "accession": "GCA_013004595.1", "taxid": 199591, "species_taxid": 199591, "relation_to_type": "type", "validated": true, "ani": 79.5788, "matched_fragments": 398, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium gallinarum", "strain": "strain=Re57", "accession": "GCA_014836885.1", "taxid": 2762220, "species_taxid": 2762220, "relation_to_type": "type", "validated": true, "ani": 79.478, "matched_fragments": 440, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium album", "strain": "strain=DSM 18261", "accession": "GCA_000426445.1", "taxid": 417948, "species_taxid": 417948, "relation_to_type": "type", "validated": true, "ani": 79.2185, "matched_fragments": 439, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium casei", "strain": "strain=FDAARGOS_936", "accession": "GCA_016026595.1", "taxid": 33889, "species_taxid": 33889, "relation_to_type": "type", "validated": true, "ani": 79.1685, "matched_fragments": 411, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium casei", "strain": "strain=CIP 102111", "accession": "GCA_900169275.1", "taxid": 33889, "species_taxid": 33889, "relation_to_type": "type", "validated": true, "ani": 79.098, "matched_fragments": 419, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 79.0178, "matched_fragments": 397, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium jeotgali", "strain": "strain=SJ5-8", "accession": "GCA_900169175.1", "taxid": 1262550, "species_taxid": 1262550, "relation_to_type": "type", "validated": true, "ani": 78.4948, "matched_fragments": 341, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium jeotgali", "strain": "strain=DSM 29217", "accession": "GCA_007828155.1", "taxid": 1262550, "species_taxid": 1262550, "relation_to_type": "type", "validated": true, "ani": 78.4779, "matched_fragments": 336, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_021729215.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 78.0758, "matched_fragments": 267, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 77.0681, "matched_fragments": 235, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005280295.1", "gtdb_species": "s__Brevibacterium sp005280295", "ani": 80.343, "matched_fragments": 504, "total_fragments": 966, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900184225.1", "gtdb_species": "s__Brevibacterium ihuae", "ani": 80.1529, "matched_fragments": 471, "total_fragments": 966, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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