{
    "type": "genome",
    "identifier": "GCF_009858255.1",
    "organism": "Nocardia caishijiensis",
    "title": "Nocardia caishijiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009858255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12250502",
        "wgs_master": "VMSD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "184756",
        "species_taxid": "184756",
        "organism_name": "Nocardia caishijiensis",
        "infraspecific_name": "strain=DSM 44831",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/13",
        "asm_name": "ASM985825v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_009858255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/858/255/GCF_009858255.1_ASM985825v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6310860",
        "genome_size_ungapped": "6310120",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "25",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009858255.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "5767",
        "protein_coding_gene_count": "5641",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-13",
    "dateModified": "2020-01-13",
    "datePublished": "2020-01-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia caishijiensis"
        ],
        "sample_taxid": [
            "184756"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.713 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.78,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6310860",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "1314612",
        "N50 (bp)": "586742",
        "Gap Ratio (%)": "0.011726",
        "GCcontent (%)": "68.2",
        "Number of CDSs": "5785",
        "Average Protein Length": "329.5",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
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                "matched_fragments": 2054,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
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                "species_taxid": 356147,
                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia ignorata",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia rosealba",
                "strain": "strain=NEAU-G4",
                "accession": "GCA_020216065.1",
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                "species_taxid": 2878563,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_004362495.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia colli",
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                "accession": "GCA_008704205.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_001612825.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
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                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}