{ "type": "genome", "identifier": "GCF_009861505.1", "organism": "Pseudomonas izuensis", "title": "Pseudomonas izuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Juntendo University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009861505.1", "bioproject": "PRJNA224116", "biosample": "SAMN13530344", "wgs_master": "WTFT00000000.1", "refseq_category": "na", "taxid": "2684212", "species_taxid": "2684212", "organism_name": "Pseudomonas izuensis", "infraspecific_name": "strain=IzPS43_3003", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/13", "asm_name": "ASM986150v1", "asm_submitter": "Juntendo University", "gbrs_paired_asm": "GCA_009861505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/861/505/GCF_009861505.1_ASM986150v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6867808", "genome_size_ungapped": "6865466", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "92", "contig_count": "92", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009861505.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6282", "protein_coding_gene_count": "6111", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-13", "dateModified": "2020-01-13", "datePublished": "2020-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas izuensis" ], "sample_taxid": [ "2684212" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Izu Oshima" ], "sample_host_location_id": [], "data_size": "1.933 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6867808", "Number of Sequences": "92", "Longest Sequences (bp)": "486402", "N50 (bp)": "211289", "Gap Ratio (%)": "0.034392", "GCcontent (%)": "59.6", "Number of CDSs": "6159", "Average Protein Length": "322.0", "Coding Ratio (%)": "86.6", "Number of rRNAs": "5", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2243, "total_fragments": 2245, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas moorei", "strain": "strain=CCUG 53114", "accession": "GCA_008801475.1", "taxid": 395599, "species_taxid": 395599, "relation_to_type": "type", "validated": true, "ani": 87.9708, "matched_fragments": 1570, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mohnii", "strain": "strain=DSM 18327", "accession": "GCA_900105115.1", "taxid": 395600, "species_taxid": 395600, "relation_to_type": "type", "validated": true, "ani": 87.8503, "matched_fragments": 1546, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=CCUG 53116", "accession": "GCA_008801455.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 87.7423, "matched_fragments": 1517, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=MT1", "accession": "GCA_001945365.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 87.7279, "matched_fragments": 1519, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoccidens", "strain": "strain=SWRI74", "accession": "GCA_019145495.1", "taxid": 2842347, "species_taxid": 2842347, "relation_to_type": "type", "validated": true, "ani": 87.7114, "matched_fragments": 1607, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 87.6346, "matched_fragments": 1581, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas umsongensis", "strain": "strain=DSM 16611", "accession": "GCA_002236105.1", "taxid": 198618, "species_taxid": 198618, "relation_to_type": "type", "validated": true, "ani": 87.5763, "matched_fragments": 1595, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfatiphila", "strain": "strain=AP3_16", "accession": "GCA_002934665.1", "taxid": 2011015, "species_taxid": 2011015, "relation_to_type": "type", "validated": true, "ani": 87.5726, "matched_fragments": 1615, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 87.4275, "matched_fragments": 1554, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=NBRC 103147", "accession": "GCA_002091695.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 86.7357, "matched_fragments": 1495, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=CCUG 49675", "accession": "GCA_008801375.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 86.5854, "matched_fragments": 1540, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=Dha-51", "accession": "GCA_004348895.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 86.585, "matched_fragments": 1531, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, 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85.1353, "matched_fragments": 1383, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas rhizophila", "strain": "strain=S211", "accession": "GCA_003033885.1", "taxid": 2045200, "species_taxid": 2045200, "relation_to_type": "type", "validated": true, "ani": 83.9602, "matched_fragments": 1187, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 83.5376, "matched_fragments": 1156, "total_fragments": 2245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas gessardii", "strain": "", "accession": "GCA_900625085.1", "taxid": 78544, "species_taxid": 78544, "relation_to_type": "type", "validated": true, "ani": 83.4021, "matched_fragments": 1139, "total_fragments": 2245, 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