{ "type": "genome", "identifier": "GCF_009866965.1", "organism": "Propylenella binzhouense", "title": "Propylenella binzhouense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Jinan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009866965.1", "bioproject": "PRJNA224116", "biosample": "SAMN11253839", "wgs_master": "SPKJ00000000.1", "refseq_category": "reference genome", "taxid": "2555902", "species_taxid": "2555902", "organism_name": "Propylenella binzhouense", "infraspecific_name": "strain=L72", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/14", "asm_name": "ASM986696v1", "asm_submitter": "University of Jinan", "gbrs_paired_asm": "GCA_009866965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/866/965/GCF_009866965.1_ASM986696v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4703686", "genome_size_ungapped": "4703686", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "229", "contig_count": "229", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009866965.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4645", "protein_coding_gene_count": "4475", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-14", "dateModified": "2020-01-14", "datePublished": "2020-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Propylenella binzhouense" ], "sample_taxid": [ "2555902" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shandong" ], "sample_host_location_id": [], "data_size": "1.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4703686", "Number of Sequences": "229", "Longest Sequences (bp)": "158412", "N50 (bp)": "38180", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "4328", "Average Protein Length": "308.9", "Coding Ratio (%)": "85.3", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Propylenella binzhouense", "strain": "strain=L72", "accession": "GCA_009866965.1", "taxid": 2555902, "species_taxid": 2555902, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1444, "total_fragments": 1451, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Afifella pfennigii", "strain": "strain=DSM 17143", "accession": "GCA_000688515.1", "taxid": 209897, "species_taxid": 209897, "relation_to_type": "type", "validated": true, "ani": 78.3454, "matched_fragments": 415, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella aestuarii", "strain": "strain=JA968", "accession": "GCA_004023665.1", "taxid": 1909496, "species_taxid": 1909496, "relation_to_type": "type", "validated": true, "ani": 77.88, "matched_fragments": 301, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibaculum baratangense", "strain": "strain=AMV1", "accession": "GCA_000496075.1", "taxid": 1358440, "species_taxid": 1358440, "relation_to_type": "type", "validated": true, "ani": 77.8004, "matched_fragments": 389, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.7411, "matched_fragments": 412, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 77.6765, "matched_fragments": 415, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_003258905.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 77.6436, "matched_fragments": 314, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_016584015.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 77.6267, "matched_fragments": 318, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_900102695.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 77.6028, "matched_fragments": 319, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.5906, "matched_fragments": 384, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium oceanicum", "strain": "strain=B7", "accession": "GCA_001889605.1", "taxid": 1670800, "species_taxid": 1670800, "relation_to_type": "type", "validated": true, "ani": 77.4997, "matched_fragments": 325, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia hirudinis", "strain": "strain=DSM 25966", "accession": "GCA_014196455.1", "taxid": 1293440, "species_taxid": 1293440, "relation_to_type": "type", "validated": true, "ani": 77.4686, "matched_fragments": 349, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidamorphus gemmatus", "strain": "strain=DSM 19345", "accession": "GCA_004346195.1", "taxid": 747076, "species_taxid": 747076, "relation_to_type": "type", "validated": true, "ani": 77.3916, "matched_fragments": 306, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella endophytica", "strain": "strain=CBS5Q-3", "accession": "GCA_004519335.1", "taxid": 2558362, "species_taxid": 2558362, "relation_to_type": "type", "validated": true, "ani": 77.3728, "matched_fragments": 386, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.3442, "matched_fragments": 459, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 77.3264, "matched_fragments": 292, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 77.2061, "matched_fragments": 268, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=USDA 1002", "accession": "GCA_017876815.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 77.1051, "matched_fragments": 259, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=USDA1002", "accession": "GCA_009601385.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 77.0791, "matched_fragments": 251, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 77.0756, "matched_fragments": 456, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 77.016, "matched_fragments": 243, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=NBRC 14782", "accession": "GCA_006539625.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 76.9883, "matched_fragments": 249, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 76.8288, "matched_fragments": 286, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cucumibacter marinus", "strain": "strain=DSM 18995", "accession": "GCA_000429865.1", "taxid": 1121252, "species_taxid": 1121252, "relation_to_type": "type", "validated": true, "ani": 76.5296, "matched_fragments": 120, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodothalassium salexigens", "strain": "strain=DSM 2132", "accession": "GCA_016583875.1", "taxid": 1086, "species_taxid": 1086, "relation_to_type": "type", "validated": true, "ani": 75.9769, "matched_fragments": 139, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009866965.1", "gtdb_species": "s__Propylenella binzhouense", "ani": 100.0, "matched_fragments": 1444, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Afifellaceae;g__Propylenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000688515.1", "gtdb_species": "s__Afifella pfennigii", "ani": 78.2952, "matched_fragments": 421, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Afifellaceae;g__Afifella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900110915.1", "gtdb_species": "s__Propylenella sp900110915", "ani": 78.1952, "matched_fragments": 359, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Afifellaceae;g__Propylenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017305835.1", "gtdb_species": "s__RCIO01 sp017305835", "ani": 77.9506, "matched_fragments": 410, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RCIO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004023665.1", "gtdb_species": "s__Afifella aestuarii", "ani": 77.8761, "matched_fragments": 302, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Afifellaceae;g__Afifella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000496075.1", "gtdb_species": "s__Lutibaculum baratangense", "ani": 77.8128, "matched_fragments": 386, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Tepidamorphaceae;g__Lutibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014495845.1", "gtdb_species": "s__Mesorhizobium_E sp014495845", "ani": 77.6538, "matched_fragments": 418, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102695.1", "gtdb_species": "s__Afifella marina", "ani": 77.6067, "matched_fragments": 318, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Afifellaceae;g__Afifella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_017307955.1", "gtdb_species": "s__Kaistia sp017307955", "ani": 77.5857, "matched_fragments": 386, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900185725.1", "gtdb_species": "s__Stappia sp900185725", "ani": 77.5577, "matched_fragments": 372, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Stappia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_004963905.1", "gtdb_species": "s__Mesorhizobium sp004963905", "ani": 77.4936, "matched_fragments": 359, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196455.1", "gtdb_species": "s__Kaistia hirudinis", "ani": 77.4592, "matched_fragments": 350, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.80", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013812985.1", "gtdb_species": "s__Propylenella sp013812985", "ani": 77.4443, "matched_fragments": 258, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Afifellaceae;g__Propylenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002088275.1", "gtdb_species": "s__Jiella sp002088275", "ani": 77.3954, "matched_fragments": 401, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Jiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004346195.1", "gtdb_species": "s__Tepidamorphus gemmatus", "ani": 77.3916, "matched_fragments": 306, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Tepidamorphaceae;g__Tepidamorphus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900469965.1", "gtdb_species": "s__Mycoplana sp900469965", "ani": 77.3567, "matched_fragments": 352, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mycoplana", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_004362745.1", "gtdb_species": "s__Oharaeibacter diazotrophicus", "ani": 77.3377, "matched_fragments": 459, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Pleomorphomonadaceae;g__Oharaeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004103825.1", "gtdb_species": "s__Hansschlegelia zhihuaiae", "ani": 77.3182, "matched_fragments": 381, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003105195.1", "gtdb_species": "s__FEB-22 sp003105195", "ani": 77.2657, "matched_fragments": 329, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__FEB-22", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Propylenella", "binzhouense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }