# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_58	LOCUS_00570	sequence02:1756..1908(+)	frameshift		1842	WP_001021308.1	AAA family ATPase	58.0	15.4	93.1
MGA_59	LOCUS_00580	sequence02:1905..2318(+)	frameshift		1842	WP_002989022.1	AAA family ATPase	99.3	72.7	63.2
MGA_74	LOCUS_00730	sequence02:20912..21244(+)	partial			WP_012775705.1	PTS sugar transporter subunit IIC	74.5	17.9	80.5
MGA_110	LOCUS_01090	sequence03:11311..12717(-)	partial			WP_158580290.1	YadA-like family protein	47.4	5.0	47.6
MGA_118	LOCUS_01170	sequence03:20330..21982(+)	partial			WP_011392893.1	helix-turn-helix domain-containing protein	60.7	83.4	24.6
MGA_128	LOCUS_01270	sequence03:31721..32728(-)	partial			WP_011285380.1	sensor histidine kinase	97.3	72.5	52.1
MGA_152	LOCUS_01490	sequence04:7138..7590(-)	partial			WP_002469559.1	antiholin-like murein hydrolase modulator LrgA	74.0	74.5	55.0
MGA_186	LOCUS_01830	sequence04:49652..50908(-)	partial			WP_010922714.1	M protein	78.5	70.2	25.8
MGA_187	LOCUS_01840	sequence04:51224..51559(-)	partial			WP_010922693.1	adhesin Scl1	62.2	19.0	40.6
MGA_197	LOCUS_01920	sequence05:8786..8995(+)	partial			WP_001548522.1	TM2 domain-containing protein	91.3	68.5	65.1
MGA_199	LOCUS_01940	sequence05:10197..10946(+)	partial			WP_054278179.1	site-specific integrase	66.3	43.3	57.0
MGA_208	LOCUS_02030	sequence05:18704..19780(+)	partial			WP_010922714.1	M protein	88.0	61.0	28.4
MGA_244	LOCUS_02390	sequence06:73..657(+)	partial			WP_010921819.1	acetyl-CoA C-acetyltransferase	93.8	46.2	81.3
MGA_286	LOCUS_02810	sequence06:46306..46839(+)	frameshift		46195,46831	WP_002264303.1	PRD domain-containing protein	97.2	61.4	62.2
MGA_287	LOCUS_02820	sequence06:47241..48137(+)	partial			WP_002263494.1	ISL3-like element ISSmu2 family transposase	98.7	70.7	59.5
MGA_288	LOCUS_02830	sequence06:48218..48943(+)	partial			WP_002262239.1	6-phospho-beta-glucosidase	99.6	50.2	79.2
MGA_290	LOCUS_02850	sequence07:217..393(+)	partial			WP_000048058.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_295	LOCUS_02900	sequence07:4792..5352(+)	frameshift		5316	WP_000848921.1	glycosyltransferase family 2 protein	92.5	57.0	58.1
MGA_296	LOCUS_02910	sequence07:5337..5699(+)	frameshift		5316	WP_000848921.1	glycosyltransferase family 2 protein	95.8	38.1	58.3
MGA_325	LOCUS_03200	sequence07:33519..35984(+)	partial			WP_012027720.1	transglutaminase domain-containing protein	78.6	60.4	23.1
MGA_335	LOCUS_03300	sequence07:47320..47730(-)	partial			WP_010922142.1	membrane protein	61.0	59.6	59.6
MGA_344	LOCUS_03390	sequence08:8946..9263(+)	partial			WP_002983650.1	DNA-directed RNA polymerase subunit omega	72.4	72.4	89.5
MGA_359	LOCUS_03540	sequence08:24623..25039(+)	partial			WP_002263025.1	ComF family protein	100.0	63.3	56.7
MGA_381	LOCUS_03760	sequence09:394..633(+)	frameshift		618	WP_001019932.1	response regulator transcription factor	94.9	30.0	46.7
MGA_382	LOCUS_03770	sequence09:650..1141(+)	frameshift		618	WP_001219152.1	LytTR family DNA-binding domain-containing protein	97.5	64.9	44.0
MGA_383	LOCUS_03780	sequence09:1650..2486(+)	partial			WP_001017622.1	sensor histidine kinase	98.9	61.7	42.2
MGA_387	LOCUS_03820	sequence09:4142..4345(-)	frameshift		4309,4327	WP_143249001.1	IS3 family transposase	79.1	38.7	56.6
MGA_424	LOCUS_04190	sequence10:3766..4095(+)	frameshift		4086	WP_000151028.1	ATP-binding cassette domain-containing protein	98.2	51.7	83.2
MGA_425	LOCUS_04200	sequence10:4190..4390(+)	frameshift		4083	WP_011837642.1	ATP-binding cassette domain-containing protein	97.0	30.9	85.9
MGA_430	LOCUS_04250	sequence10:7219..7590(-)	partial			WP_002263494.1	ISL3-like element ISSmu2 family transposase	93.5	27.6	57.4
MGA_432	LOCUS_04270	sequence10:7903..8901(-)	partial			WP_001043090.1	LPXTG cell wall anchor domain-containing protein	88.0	57.8	36.0
MGA_464	LOCUS_04590	sequence11:1499..1729(+)	partial			WP_001017633.1	sensor histidine kinase	100.0	16.9	38.2
MGA_468	LOCUS_04630	sequence11:5131..5901(+)	partial			WP_000369170.1	hypothetical protein	100.0	74.4	84.4
MGA_480	LOCUS_04750	sequence11:20406..20810(-)	partial			WP_015944392.1	helix-turn-helix transcriptional regulator	55.2	35.1	45.9
MGA_520	LOCUS_05150	sequence11:65739..67391(-)	partial			WP_001105776.1	3D domain-containing protein	52.2	70.0	23.0
MGA_559	LOCUS_05540	sequence11:106316..106591(+)	partial			WP_000151017.1	alpha,alpha-phosphotrehalase	90.1	15.0	61.0
MGA_561	LOCUS_05560	sequence11:109025..110566(-)	partial			WP_012775427.1	LPXTG cell wall anchor domain-containing protein	21.6	16.1	39.5
MGA_576	LOCUS_05710	sequence11:124892..126502(-)	partial			WP_000749095.1	isopeptide-forming domain-containing fimbrial protein	45.3	7.3	26.8
MGA_591	LOCUS_05860	sequence11:143876..144976(+)	partial			WP_010922714.1	M protein	23.0	14.5	39.3
MGA_604	LOCUS_05990	sequence11:161413..162972(+)	partial			WP_010922714.1	M protein	73.4	80.8	22.6
MGA_616	LOCUS_06110	sequence11:173996..175642(-)	partial			WP_010922714.1	M protein	73.4	66.9	25.8
MGA_618	LOCUS_06130	sequence11:177000..177155(-)	frameshift,internal_stop_codon	177296..177298(-)	177235	WP_000395513.1	type II toxin-antitoxin system RelE/ParE family toxin	100.0	44.3	68.6
MGA_620	LOCUS_06150	sequence11:177990..179507(-)	partial			WP_000749095.1	isopeptide-forming domain-containing fimbrial protein	61.6	9.7	27.8
MGA_621	LOCUS_06160	sequence11:179773..181536(-)	partial			WP_011254411.1	chromosome segregation protein SMC	41.1	22.7	23.4
MGA_663	LOCUS_06570	sequence13:5148..5654(+)	partial			WP_010922709.1	pneumococcal-type histidine triad protein	92.9	18.7	61.1
MGA_678	LOCUS_06720	sequence13:22333..22755(+)	partial			WP_011948039.1	cupin domain-containing protein	97.9	62.6	53.3
MGA_700	LOCUS_06930	sequence14:11212..12276(-)	frameshift		12281	WP_011101564.1	NAD(P)/FAD-dependent oxidoreductase	99.7	78.4	51.6
MGA_701	LOCUS_06940	sequence14:12240..12551(-)	frameshift		12281	WP_002456709.1	NAD(P)/FAD-dependent oxidoreductase	82.5	19.0	52.9
MGA_705	LOCUS_06980	sequence14:17276..17422(+)	frameshift		17168	WP_000582587.1	hypothetical protein	97.9	28.5	66.0
MGA_736	LOCUS_07290	sequence15:11855..12568(-)	partial			WP_010922625.1	glycoside hydrolase family 32 protein	94.1	46.6	64.6
MGA_755	LOCUS_07470	sequence16:1052..2188(-)	partial			WP_010922690.1	streptokinase	79.6	71.8	25.1
MGA_761	LOCUS_07530	sequence16:8239..8574(+)	partial			WP_010922693.1	adhesin Scl1	62.2	19.0	40.6
MGA_831	LOCUS_08230	sequence18:10398..10658(+)	frameshift,internal_stop_codon	10344..10346(+)	10622	WP_002262673.1	YlbF family regulator	91.9	54.1	43.0
MGA_846	LOCUS_08380	sequence18:22257..23924(+)	partial			WP_002300997.1	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	94.8	61.0	36.8
MGA_869	LOCUS_08610	sequence19:19048..22608(-)	partial			WP_001868236.1	SpaA isopeptide-forming pilin-related protein	7.9	10.4	37.2
MGA_916	LOCUS_09060	sequence22:2671..2844(-)	frameshift,internal_stop_codon	2863..2865(-)	2682	WP_000481712.1	Txe/YoeB family addiction module toxin	100.0	67.9	91.2
MGA_926	LOCUS_09160	sequence22:12723..13025(-)	partial			WP_010922720.1	cysteine proteinase exotoxin SpeB	53.0	13.6	48.1
MGA_932	LOCUS_09220	sequence22:19872..21638(+)	partial			WP_011101919.1	bacterial Ig-like domain-containing protein	12.2	6.2	45.8
MGA_943	LOCUS_09330	sequence22:37620..38024(+)	frameshift		37979	WP_000147179.1	ABC transporter permease subunit	92.5	49.0	67.7
MGA_945	LOCUS_09350	sequence22:38548..39621(-)	partial			WP_011836928.1	YSIRK signal domain/LPXTG anchor domain surface protein	86.8	58.9	51.4
MGA_965	LOCUS_09550	sequence22:63692..64888(+)	internal_stop_codon	63641..63643(+)		WP_010922715.1	virulence factor transcriptional regulator Mga	100.0	74.7	32.8
MGA_976	LOCUS_09660	sequence22:72212..72874(-)	partial			WP_012775187.1	CPBP family intramembrane metalloprotease	75.5	71.2	36.7
MGA_992	LOCUS_09820	sequence22:91691..91867(-)	frameshift,internal_stop_codon	91904..91906(-)	91931	WP_120719025.1	IS3 family transposase	98.3	12.7	84.2
MGA_1025	LOCUS_10140	sequence23:9629..10027(-)	partial			WP_001224528.1	hypothetical protein	94.7	61.0	44.0
MGA_1026	LOCUS_10150	sequence23:10067..11185(-)	partial			WP_034350357.1	alpha/beta hydrolase	61.0	68.5	29.8
MGA_1048	LOCUS_10370	sequence25:1639..1986(-)	partial			WP_010922318.1	DUF3307 domain-containing protein	88.7	42.9	69.6
MGA_1052	LOCUS_10410	sequence25:6656..6856(-)	frameshift		6921	WP_000162771.1	siderophore ABC transporter substrate-binding protein	97.0	18.7	70.3
MGA_1053	LOCUS_10420	sequence25:6919..7473(-)	frameshift,internal_stop_codon	7546..7548(-)	6930	WP_000162771.1	siderophore ABC transporter substrate-binding protein	100.0	53.8	62.0
MGA_1056	LOCUS_10450	sequence25:9487..9990(-)	frameshift		10144,10084	WP_000735588.1	iron chelate uptake ABC transporter family permease subunit	97.6	50.9	58.3
MGA_1057	LOCUS_10460	sequence25:10133..10450(-)	frameshift		10144,10084	WP_000735588.1	iron chelate uptake ABC transporter family permease subunit	97.1	31.9	67.6
MGA_1062	LOCUS_10510	sequence25:13887..14090(-)	partial			WP_010905405.1	excisionase	86.6	68.6	55.9
MGA_1063	LOCUS_10520	sequence25:14745..15341(-)	frameshift		15336	WP_002263742.1	thioredoxin family protein	68.7	41.8	39.3
MGA_1064	LOCUS_10530	sequence25:15325..15819(-)	frameshift		15336	WP_003549759.1	LPXTG cell wall anchor domain-containing protein	80.5	31.7	34.7
MGA_1068	LOCUS_10570	sequence25:17382..17672(+)	frameshift		17657	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	89.4
MGA_1069	LOCUS_10580	sequence25:17708..17944(+)	frameshift		17657	WP_088197863.1	IS3-like element ISSag2 family transposase	57.7	12.2	71.1
MGA_1072	LOCUS_10600	sequence26:2139..2609(+)	internal_stop_codon	2106..2108(+)		WP_010921894.1	sigma-70 family RNA polymerase sigma factor	95.5	81.4	54.4
MGA_1101	LOCUS_10880	sequence27:14025..14207(-)	partial			WP_011068837.1	putative DNA binding domain-containing protein	86.7	10.1	60.4
MGA_1127	LOCUS_11140	sequence29:11532..11693(-)	internal_stop_codon	11307..11309(-),11532..11534(-),11319..11321(-)		WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	14.4	73.6
MGA_1168	LOCUS_11540	sequence33:6968..7171(+)	partial			WP_002262060.1	DUF910 family protein	71.6	70.6	85.4
MGA_1218	LOCUS_12040	sequence33:60183..60863(+)	partial			WP_002983967.1	ComEA family DNA-binding protein	70.8	71.8	47.5
MGA_1234	LOCUS_12200	sequence33:80527..82287(-)	partial			WP_002225480.1	IgA-specific serine endopeptidase autotransporter	57.0	20.2	21.9
MGA_1266	LOCUS_12520	sequence36:2301..2552(-)	frameshift		2655	WP_001007697.1	site-specific integrase	100.0	22.0	81.9
MGA_1267	LOCUS_12530	sequence36:2647..3438(-)	frameshift		2661	WP_001007697.1	site-specific integrase	99.2	69.2	65.1
MGA_1269	LOCUS_12550	sequence36:3706..4641(-)	partial			WP_011254008.1	Rep family protein	65.3	59.7	28.5
MGA_1273	LOCUS_12590	sequence36:6425..6946(-)	partial			WP_011020582.1	PepSY domain-containing protein	83.8	71.4	34.2
MGA_1297	LOCUS_12810	sequence43:395..574(+)	partial			WP_012027387.1	restriction endonuclease subunit S	100.0	11.3	88.1
MGA_1300	LOCUS_12840	sequence43:1957..>2494(-)	partial			WP_000110093.1	restriction endonuclease subunit S	95.5	28.8	50.0
MGA_1355	LOCUS_13390	sequence44:63040..63318(-)	partial			WP_002286400.1	tyrosine decarboxylase	95.7	14.1	63.6
MGA_1384	LOCUS_13680	sequence44:94878..95501(-)	frameshift		95511	WP_002994010.1	hypothetical protein	99.0	78.2	53.7
MGA_1392	LOCUS_13750	sequence47:383..1207(+)	frameshift		308	WP_100190746.1	IS3 family transposase	98.5	70.7	64.1
MGA_1393	LOCUS_13760	sequence48:338..535(-)	frameshift		545,542	WP_000257255.1	site-specific integrase	78.5	13.7	72.5
MGA_1438	LOCUS_14200	sequence50:53703..54125(+)	internal_stop_codon	54123..54125(+)		WP_000823931.1	DNA/RNA non-specific endonuclease	70.7	28.0	72.7
MGA_1439	LOCUS_14210	sequence50:54174..54785(+)	internal_stop_codon	54123..54125(+)		WP_000823931.1	DNA/RNA non-specific endonuclease	99.5	56.2	48.0
MGA_1450	LOCUS_14320	sequence50:67149..67556(+)	internal_stop_codon	67554..67556(+)		WP_002213929.1	virulence RhuM family protein	60.7	24.4	53.7
MGA_1483	LOCUS_14640	sequence51:6676..7590(+)	partial			WP_003594496.1	phosphate acyltransferase	70.4	75.6	45.8
MGA_1497	LOCUS_14780	sequence51:22634..24016(+)	partial			WP_158580290.1	YadA-like family protein	62.0	6.1	41.9
MGA_1515	LOCUS_14960	sequence51:46999..47490(+)	partial			WP_002262024.1	PTS sugar transporter subunit IIC	90.8	36.5	50.0
MGA_1553	LOCUS_15340	sequence52:6953..7219(-)	frameshift		7280	WP_003426191.1	sigma-70 family RNA polymerase sigma factor	100.0	64.7	93.2
MGA_1554	LOCUS_15350	sequence52:7209..7361(-)	frameshift		7280	WP_185623697.1	sigma-70 family RNA polymerase sigma factor	94.0	34.3	61.7
MGA_1564	LOCUS_15450	sequence52:17891..18388(-)	partial			WP_002287700.1	TIR domain-containing protein	60.0	62.7	41.2
MGA_1566	LOCUS_15470	sequence52:19819..20739(-)	frameshift		20740	WP_005170304.1	BsuBI/PstI family type II restriction endonuclease	98.7	37.2	36.8
MGA_1571	LOCUS_15520	sequence52:23945..28696(-)	partial			WP_011861367.1	DEAD/DEAH box helicase family protein	100.0	52.9	95.0
MGA_1572	LOCUS_15530	sequence52:28662..32303(-)	partial			WP_011860792.1	DEAD/DEAH box helicase family protein	98.6	41.0	81.9
MGA_1578	LOCUS_15590	sequence52:40433..40651(-)	internal_stop_codon	40691..40693(-)		WP_011861360.1	PrgI family protein	100.0	55.8	95.8
MGA_1641	LOCUS_16220	sequence53:49289..50692(+)	partial			WP_011285510.1	LPXTG-anchored collagen-like adhesin Scl2/SclB	27.4	32.4	34.4
MGA_1675	LOCUS_16560	sequence54:35828..36043(+)	frameshift		35989	WP_000683741.1	NAD(P)-binding domain-containing protein	85.9	16.3	47.5
MGA_1676	LOCUS_16570	sequence54:35940..36347(+)	frameshift		36344,35989	WP_000683741.1	NAD(P)-binding domain-containing protein	94.1	33.9	64.6
MGA_1677	LOCUS_16580	sequence54:36380..36958(+)	frameshift		36344	WP_000683741.1	NAD(P)-binding domain-containing protein	100.0	50.9	56.2
MGA_1697	LOCUS_16780	sequence54:53821..53973(+)	partial			WP_002985576.1	SPJ_0845 family protein	72.0	70.6	83.3
