{ "type": "genome", "identifier": "GCF_009870755.1", "organism": "Streptococcus halichoeri", "title": "Streptococcus halichoeri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Helsinki University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009870755.1", "bioproject": "PRJNA224116", "biosample": "SAMN13318519", "wgs_master": "WLZU00000000.1", "refseq_category": "na", "taxid": "254785", "species_taxid": "254785", "organism_name": "Streptococcus halichoeri", "infraspecific_name": "strain=CCUG48324", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/14", "asm_name": "ASM987075v1", "asm_submitter": "Helsinki University", "gbrs_paired_asm": "GCA_009870755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/870/755/GCF_009870755.1_ASM987075v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1891345", "genome_size_ungapped": "1891345", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009870755.1-RS_2024_04_23", "annotation_date": "2024-04-23", "total_gene_count": "1728", "protein_coding_gene_count": "1619", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-14", "dateModified": "2020-01-14", "datePublished": "2020-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus halichoeri" ], "sample_taxid": [ "254785" ], "sample_host_organism": [ "Seal" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.543 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1891345", "Number of Sequences": "54", "Longest Sequences (bp)": "182811", "N50 (bp)": "53979", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "1681", "Average Protein Length": "311.9", "Coding Ratio (%)": "83.2", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus halichoeri", "strain": "strain=CCUG48324", "accession": "GCA_009870755.1", "taxid": 254785, "species_taxid": 254785, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 594, "total_fragments": 601, 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"organism_name": "Streptococcus dysgalactiae", "strain": "strain=FDAARGOS_1157", "accession": "GCA_016724885.1", "taxid": 1334, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 78.9263, "matched_fragments": 145, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus urinalis", "strain": "strain=NCTC13766", "accession": "GCA_900636885.1", "taxid": 149016, "species_taxid": 149016, "relation_to_type": "type", "validated": true, "ani": 78.9035, "matched_fragments": 96, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus didelphis", "strain": "strain=DSM 15616", "accession": "GCA_000380005.1", "taxid": 102886, "species_taxid": 102886, "relation_to_type": "type", "validated": true, "ani": 78.8944, "matched_fragments": 120, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi", "strain": "strain=DSM 20561", "accession": "GCA_900110405.1", "taxid": 1336, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.8618, "matched_fragments": 119, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus uberis", "strain": "strain=NCTC3858", "accession": "GCA_900475595.1", "taxid": 1349, "species_taxid": 1349, "relation_to_type": "type", "validated": true, "ani": 78.8088, "matched_fragments": 123, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi", "strain": "strain=ATCC 33398", "accession": "GCA_900156215.1", "taxid": 1336, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.7825, "matched_fragments": 122, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus urinalis", "strain": "strain=2285-97", "accession": "GCA_000188055.3", "taxid": 149016, 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