{ "type": "genome", "identifier": "GCF_009901585.1", "organism": "Poritiphilus flavus", "title": "Poritiphilus flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009901585.1", "bioproject": "PRJNA224116", "biosample": "SAMN13752174", "wgs_master": "WXYO00000000.1", "refseq_category": "reference genome", "taxid": "2697053", "species_taxid": "2697053", "organism_name": "Poritiphilus flavus", "infraspecific_name": "strain=R33", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/17", "asm_name": "ASM990158v1", "asm_submitter": "Guangxi University", "gbrs_paired_asm": "GCA_009901585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/901/585/GCF_009901585.1_ASM990158v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4989619", "genome_size_ungapped": "4989619", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009901585.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4197", "protein_coding_gene_count": "4142", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-17", "dateModified": "2020-01-17", "datePublished": "2020-01-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Poritiphilus flavus" ], "sample_taxid": [ "2697053" ], "sample_host_organism": [ "Porities sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Nanning" ], "sample_host_location_id": [], "data_size": "1.414 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4989619", "Number of Sequences": "19", "Longest Sequences (bp)": "842719", "N50 (bp)": "550540", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "4107", "Average Protein Length": "354.8", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Poritiphilus flavus", "strain": "strain=R33", "accession": "GCA_009901585.1", "taxid": 2697053, "species_taxid": 2697053, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1654, "total_fragments": 1655, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Muriicola marianensis", "strain": "strain=CGMCC 1.12606", "accession": "GCA_014638095.1", "taxid": 1324801, "species_taxid": 1324801, "relation_to_type": "type", "validated": true, "ani": 76.9959, "matched_fragments": 120, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eudoraea adriatica", "strain": "strain=DSM 19308", "accession": "GCA_000382125.1", "taxid": 446681, "species_taxid": 446681, "relation_to_type": "type", "validated": true, "ani": 76.952, "matched_fragments": 119, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muriicola jejuensis", "strain": "strain=KCTC 22299", "accession": "GCA_010671595.1", "taxid": 504488, "species_taxid": 504488, "relation_to_type": "type", "validated": true, "ani": 76.876, "matched_fragments": 134, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muriicola soli", "strain": "strain=MMS17-SY002", "accession": "GCA_004139715.1", "taxid": 2507538, "species_taxid": 2507538, "relation_to_type": "type", "validated": true, "ani": 76.7912, "matched_fragments": 116, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda beolgyonensis", "strain": "strain=KCTC 23501", "accession": "GCA_003992615.1", "taxid": 864064, "species_taxid": 864064, "relation_to_type": "type", "validated": true, "ani": 76.6753, "matched_fragments": 86, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter hampyeongensis", "strain": "strain=JCM 17788", "accession": "GCA_002909255.1", "taxid": 1028743, "species_taxid": 1028743, "relation_to_type": "type", "validated": true, "ani": 76.6587, "matched_fragments": 80, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_003584165.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 76.4064, "matched_fragments": 72, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_008017345.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 76.4064, "matched_fragments": 72, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda profundi", "strain": "strain=BC31-3-A3", "accession": "GCA_017313275.1", "taxid": 2915620, "species_taxid": 2915620, "relation_to_type": "type", "validated": true, "ani": 76.3964, "matched_fragments": 78, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda nanhaiensis", "strain": "strain=SM1704", "accession": "GCA_003382275.1", "taxid": 2292706, 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"below_threshold" }, { "organism_name": "Sinomicrobium kalidii", "strain": "strain=HD2P242", "accession": "GCA_021183825.1", "taxid": 2900738, "species_taxid": 2900738, "relation_to_type": "type", "validated": true, "ani": 75.872, "matched_fragments": 54, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009901585.1", "gtdb_species": "s__R33 sp009901585", "ani": 100.0, "matched_fragments": 1654, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__R33", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013042925.1", "gtdb_species": "s__Eudoraea sp013042925", "ani": 77.0601, "matched_fragments": 71, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Eudoraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.70", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014638095.1", "gtdb_species": "s__Muriicola marianensis", "ani": 76.979, "matched_fragments": 120, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010671595.1", "gtdb_species": "s__Muriicola jejuensis", "ani": 76.8737, "matched_fragments": 133, "total_fragments": 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