{ "type": "genome", "identifier": "GCF_009903685.1", "organism": "Flagellimonas ochracea", "title": "Flagellimonas ochracea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009903685.1", "bioproject": "PRJNA224116", "biosample": "SAMN13752078", "wgs_master": "JAAABI000000000.1", "refseq_category": "reference genome", "taxid": "2696472", "species_taxid": "2696472", "organism_name": "Flagellimonas ochracea", "infraspecific_name": "strain=JGD-17", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/18", "asm_name": "ASM990368v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_009903685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/903/685/GCF_009903685.1_ASM990368v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3571907", "genome_size_ungapped": "3571887", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3342", "protein_coding_gene_count": "3274", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-18", "dateModified": "2020-01-18", "datePublished": "2020-01-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Flagellimonas ochracea" ], "sample_taxid": [ "2696472" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Taean-gun" ], "sample_host_location_id": [], "data_size": "1.015 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3571907", "Number of Sequences": "52", "Longest Sequences (bp)": "1179409", "N50 (bp)": "976511", "Gap Ratio (%)": "0.000560", "GCcontent (%)": "41.1", "Number of CDSs": "3234", "Average Protein Length": "329.9", "Coding Ratio (%)": "89.6", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Muricauda ochracea", "strain": "strain=JGD-17", "accession": "GCA_009903685.1", "taxid": 2696472, "species_taxid": 2696472, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1174, "total_fragments": 1175, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 78.1019, "matched_fragments": 330, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda alvinocaridis", "strain": "strain=SCR12", "accession": "GCA_004916895.1", "taxid": 2530200, "species_taxid": 2530200, "relation_to_type": "type", "validated": true, "ani": 78.0109, "matched_fragments": 316, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda nanhaiensis", "strain": "strain=SM1704", "accession": "GCA_003382275.1", "taxid": 2292706, "species_taxid": 2292706, "relation_to_type": "type", "validated": true, "ani": 77.9049, "matched_fragments": 342, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda ruestringensis", "strain": "strain=DSM 13258", "accession": "GCA_000224085.1", "taxid": 111501, "species_taxid": 111501, "relation_to_type": "type", "validated": true, "ani": 77.8153, "matched_fragments": 271, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aquimarina", "strain": "strain=JCM11811", "accession": "GCA_003992675.1", "taxid": 254955, "species_taxid": 254955, "relation_to_type": "type", "validated": true, "ani": 77.7174, "matched_fragments": 256, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hadalis", "strain": "strain=MT-229", "accession": "GCA_007785775.2", "taxid": 2597517, "species_taxid": 2597517, "relation_to_type": "type", "validated": true, "ani": 77.6785, "matched_fragments": 280, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda maritima", "strain": "strain=72", 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273, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda parva", "strain": "strain=DSM 25885", "accession": "GCA_900215465.1", "taxid": 1247520, "species_taxid": 1247520, "relation_to_type": "type", "validated": true, "ani": 77.5356, "matched_fragments": 281, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_008017345.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 77.5146, "matched_fragments": 315, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_003584165.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 77.5146, "matched_fragments": 315, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hymeniacidonis", "strain": "strain=176CP4-71", "accession": "GCA_004296335.1", "taxid": 2517819, "species_taxid": 2517819, "relation_to_type": "type", "validated": true, "ani": 77.4959, "matched_fragments": 276, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aurantiaca", "strain": "strain=HME9304", "accession": "GCA_003269425.1", "taxid": 1383885, "species_taxid": 1383885, "relation_to_type": "type", "validated": true, "ani": 77.4308, "matched_fragments": 249, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009903685.1", "gtdb_species": "s__Muricauda ochracea", "ani": 100.0, "matched_fragments": 1174, "total_fragments": 1175, "gtdb_taxonomy": 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