{
    "type": "genome",
    "identifier": "GCF_009905215.1",
    "organism": "Tichowtungia aerotolerans",
    "title": "Tichowtungia aerotolerans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "shandong university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009905215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13741851",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2697043",
        "species_taxid": "2697043",
        "organism_name": "Tichowtungia aerotolerans",
        "infraspecific_name": "strain=S-5007",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/19",
        "asm_name": "ASM990521v1",
        "asm_submitter": "shandong university",
        "gbrs_paired_asm": "GCA_009905215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/905/215/GCF_009905215.1_ASM990521v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3882676",
        "genome_size_ungapped": "3882676",
        "gc_percent": "53.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009905215.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3185",
        "protein_coding_gene_count": "3104",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-19",
    "dateModified": "2020-01-19",
    "datePublished": "2020-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tichowtungia aerotolerans"
        ],
        "sample_taxid": [
            "2697043"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Weihai"
        ],
        "sample_host_location_id": [],
        "data_size": "1.097 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3882676",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3882676",
        "N50 (bp)": "3882676",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.1",
        "Number of CDSs": "3138",
        "Average Protein Length": "373.1",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Tichowtungia aerotolerans",
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                "species_taxid": 2697043,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1293,
                "total_fragments": 1294,
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                "status": "conclusive"
            },
            {
                "organism_name": "Pontiella desulfatans",
                "strain": "strain=F1(T)",
                "accession": "GCA_900890425.1",
                "taxid": 2750659,
                "species_taxid": 2750659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1642,
                "matched_fragments": 130,
                "total_fragments": 1294,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontiella sulfatireligans",
                "strain": "strain=F21(T)",
                "accession": "GCA_900890705.1",
                "taxid": 2750658,
                "species_taxid": 2750658,
                "relation_to_type": "type",
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                "ani": 76.9686,
                "matched_fragments": 120,
                "total_fragments": 1294,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_009905215.1",
                "gtdb_species": "s__UBA5540 sp009905215",
                "ani": 100.0,
                "matched_fragments": 1294,
                "total_fragments": 1294,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__Kiritimatiellales;f__Pontiellaceae;g__UBA5540",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014381785.1",
                "gtdb_species": "s__UBA5540 sp014381785",
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                "matched_fragments": 307,
                "total_fragments": 1294,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__Kiritimatiellales;f__Pontiellaceae;g__UBA5540",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016342445.1",
                "gtdb_species": "s__UBA5540 sp016342445",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__Kiritimatiellales;f__Pontiellaceae;g__UBA5540",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900890425.1",
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                "total_fragments": 1294,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__Kiritimatiellales;f__Pontiellaceae;g__Pontiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013141415.1",
                "gtdb_species": "s__UBA5540 sp013141415",
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                "matched_fragments": 167,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903831085.1",
                "gtdb_species": "s__UBA5540 sp903831085",
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                "matched_fragments": 168,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__Kiritimatiellales;f__Pontiellaceae;g__UBA5540",
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                "mean_intra_species_ani": "99.88",
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                "mean_intra_species_af": "0.97",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903826865.1",
                "gtdb_species": "s__UBA5540 sp903826865",
                "ani": 76.9129,
                "matched_fragments": 147,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__Kiritimatiellales;f__Pontiellaceae;g__UBA5540",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015486775.1",
                "gtdb_species": "s__Pontiella sp015486775",
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                "matched_fragments": 59,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__Kiritimatiellales;f__Pontiellaceae;g__Pontiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Tichowtungia",
        "aerotolerans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}