{ "type": "genome", "identifier": "GCF_009906855.1", "organism": "Xylophilus rhododendri", "title": "Xylophilus rhododendri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009906855.1", "bioproject": "PRJNA224116", "biosample": "SAMN13783577", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2697032", "species_taxid": "2697032", "organism_name": "Xylophilus rhododendri", "infraspecific_name": "strain=KACC 21265", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/20", "asm_name": "ASM990685v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_009906855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/906/855/GCF_009906855.1_ASM990685v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5873400", "genome_size_ungapped": "5873400", "gc_percent": "68.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009906855.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5492", "protein_coding_gene_count": "5311", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-20", "dateModified": "2020-01-20", "datePublished": "2020-01-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Xylophilus rhododendri" ], "sample_taxid": [ "2697032" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seogwipo-si" ], "sample_host_location_id": [], "data_size": "1.582 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5873400", "Number of Sequences": "2", "Longest Sequences (bp)": "5854580", "N50 (bp)": "5854580", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "5466", "Average Protein Length": "331.2", "Coding Ratio (%)": "92.5", "Number of rRNAs": "9", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xylophilus rhododendri", "strain": "strain=KACC 21265", "accession": "GCA_009906855.1", "taxid": 2697032, "species_taxid": 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"status": "below_threshold" }, { "organism_name": "Acidovorax soli", "strain": "strain=DSM 25157", "accession": "GCA_900107605.1", "taxid": 592050, "species_taxid": 592050, "relation_to_type": "type", "validated": true, "ani": 80.0484, "matched_fragments": 565, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 79.9811, "matched_fragments": 669, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 79.9631, "matched_fragments": 942, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax 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"GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 79.6559, "matched_fragments": 821, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 79.5205, "matched_fragments": 591, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 79.1794, "matched_fragments": 494, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia testudinis", "strain": "strain=27C", "accession": "GCA_017498525.1", "taxid": 2816950, "species_taxid": 2816950, 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