{ "type": "genome", "identifier": "GCF_009908295.1", "organism": "Micromonospora rubida", "title": "Micromonospora rubida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northeast Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009908295.1", "bioproject": "PRJNA224116", "biosample": "SAMN13831090", "wgs_master": "JAAALO000000000.1", "refseq_category": "reference genome", "taxid": "2697657", "species_taxid": "2697657", "organism_name": "Micromonospora rubida", "infraspecific_name": "strain=NEAU-HG-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/20", "asm_name": "ASM990829v1", "asm_submitter": "Northeast Agricultural University", "gbrs_paired_asm": "GCA_009908295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/908/295/GCF_009908295.1_ASM990829v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7473813", "genome_size_ungapped": "7473743", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009908295.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "6478", "protein_coding_gene_count": "6241", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-20", "dateModified": "2020-01-20", "datePublished": "2020-01-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora rubida" ], "sample_taxid": [ "2697657" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Harbin" ], "sample_host_location_id": [], "data_size": "1.975 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7473813", "Number of Sequences": "37", "Longest Sequences (bp)": "1137265", "N50 (bp)": "1005853", "Gap Ratio (%)": "0.000937", "GCcontent (%)": "72.8", "Number of CDSs": "6501", "Average Protein Length": "340.7", "Coding Ratio (%)": "88.9", "Number of rRNAs": "5", "Number of tRNAs": "66", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora rubida", "strain": "strain=NEAU-HG-1", "accession": "GCA_009908295.1", "taxid": 2697657, "species_taxid": 2697657, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2473, 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"organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.8699, "matched_fragments": 1073, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 85.8654, "matched_fragments": 1394, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 85.7997, "matched_fragments": 1355, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora peucetia", "strain": "strain=DSM 43363", "accession": "GCA_900091625.1", "taxid": 47871, "species_taxid": 47871, "relation_to_type": "type", "validated": true, "ani": 85.7461, "matched_fragments": 1574, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora purpureochromogenes", "strain": "strain=DSM 43821", "accession": "GCA_900091515.1", "taxid": 47872, "species_taxid": 47872, "relation_to_type": "type", "validated": true, "ani": 85.7013, "matched_fragments": 1447, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora siamensis", "strain": "strain=DSM 45097", "accession": "GCA_900090305.1", "taxid": 299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 85.1457, "matched_fragments": 1405, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 84.8876, "matched_fragments": 1465, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 84.8668, "matched_fragments": 1247, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.3918, "matched_fragments": 1267, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=DSM 45730", "accession": "GCA_003253475.1", 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