{ "type": "genome", "identifier": "GCF_009910475.1", "organism": "Pyruvatibacter mobilis", "title": "Pyruvatibacter mobilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009910475.1", "bioproject": "PRJNA224116", "biosample": "SAMN13753500", "wgs_master": "WXYQ00000000.1", "refseq_category": "na", "taxid": "1712261", "species_taxid": "1712261", "organism_name": "Pyruvatibacter mobilis", "infraspecific_name": "strain=GYP-11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/21", "asm_name": "ASM991047v1", "asm_submitter": "Guangxi University", "gbrs_paired_asm": "GCA_009910475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/910/475/GCF_009910475.1_ASM991047v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3319072", "genome_size_ungapped": "3319072", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009910475.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "3107", "protein_coding_gene_count": "3038", "non_coding_gene_count": "53", "pubmed_id": "26476620" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-21", "dateModified": "2020-01-21", "datePublished": "2020-01-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pyruvatibacter mobilis" ], "sample_taxid": [ "1712261" ], "sample_host_organism": [ "microalgae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangzhou" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3319072", "Number of Sequences": "23", "Longest Sequences (bp)": "661847", "N50 (bp)": "450942", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "3093", "Average Protein Length": "317.3", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pyruvatibacter mobilis", "strain": "strain=GYP-11", "accession": "GCA_009910475.1", "taxid": 1712261, "species_taxid": 1712261, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1094, "total_fragments": 1097, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pyruvatibacter mobilis", "strain": "strain=CGMCC 1.15125", "accession": "GCA_014640905.1", "taxid": 1712261, "species_taxid": 1712261, "relation_to_type": "type", "validated": true, "ani": 99.9979, "matched_fragments": 1097, "total_fragments": 1097, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pyruvatibacter mobilis", "strain": "strain=CGMCC 1.15125", "accession": "GCA_012848855.1", "taxid": 1712261, "species_taxid": 1712261, "relation_to_type": "type", "validated": true, "ani": 99.9979, "matched_fragments": 1097, "total_fragments": 1097, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Parvibaculum indicum", "strain": "strain=DSM 25305", "accession": "GCA_011762095.1", "taxid": 562969, "species_taxid": 562969, "relation_to_type": "type", "validated": true, "ani": 77.6335, "matched_fragments": 272, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 77.3877, "matched_fragments": 157, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_014197785.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 77.3271, "matched_fragments": 175, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_003258835.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 77.3136, "matched_fragments": 169, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium album", "strain": "strain=XQ2", "accession": "GCA_009708035.1", "taxid": 2665159, "species_taxid": 2665159, "relation_to_type": "type", "validated": true, "ani": 77.0696, "matched_fragments": 98, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 76.9995, "matched_fragments": 153, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvibaculum sedimenti", "strain": "strain=HXT-9", "accession": "GCA_009184905.1", "taxid": 2608632, "species_taxid": 2608632, "relation_to_type": "type", "validated": true, "ani": 76.9861, "matched_fragments": 199, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter agilis", "strain": "strain=LMG 16336", "accession": "GCA_021730435.1", "taxid": 47492, "species_taxid": 47492, "relation_to_type": "type", "validated": true, "ani": 76.9006, "matched_fragments": 151, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 76.8365, "matched_fragments": 153, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum zatmanii", "strain": "strain=LMG 6087", "accession": "GCA_014845115.1", "taxid": 29429, "species_taxid": 29429, "relation_to_type": "type", "validated": true, "ani": 76.8301, "matched_fragments": 137, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvularcula oceani", "strain": "strain=JLT2013", "accession": "GCA_000733125.1", "taxid": 1247963, "species_taxid": 1247963, "relation_to_type": "type", "validated": true, "ani": 76.7946, "matched_fragments": 113, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvularcula marina", "strain": "strain=SM1705", "accession": "GCA_003399445.1", "taxid": 2292771, "species_taxid": 2292771, "relation_to_type": "type", "validated": true, "ani": 76.7756, "matched_fragments": 66, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvularcula dongshanensis", "strain": "strain=DSM 102850", "accession": "GCA_014199615.1", "taxid": 1173995, "species_taxid": 1173995, "relation_to_type": "type", "validated": true, "ani": 76.5258, "matched_fragments": 85, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 76.5016, "matched_fragments": 160, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 76.1132, "matched_fragments": 138, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 76.0954, "matched_fragments": 128, "total_fragments": 1097, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012848855.1", "gtdb_species": "s__Pyruvatibacter mobilis", "ani": 99.9979, "matched_fragments": 1097, "total_fragments": 1097, 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__Parvibaculaceae;g__Parvibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011762095.1", "gtdb_species": "s__Parvibaculum indicum", "ani": 77.611, "matched_fragments": 274, "total_fragments": 1097, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__Parvibaculaceae;g__Parvibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008630065.1", "gtdb_species": "s__Blastochloris sulfoviridis", "ani": 77.3877, "matched_fragments": 157, "total_fragments": 1097, "gtdb_taxonomy": 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