{ "type": "genome", "identifier": "GCF_009911795.1", "organism": "Pseudarthrobacter psychrotolerans", "title": "Pseudarthrobacter psychrotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009911795.1", "bioproject": "PRJNA224116", "biosample": "SAMN13831912", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2697569", "species_taxid": "2697569", "organism_name": "Pseudarthrobacter psychrotolerans", "infraspecific_name": "strain=YJ56", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/22", "asm_name": "ASM991179v1", "asm_submitter": "Korea university", "gbrs_paired_asm": "GCA_009911795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/911/795/GCF_009911795.1_ASM991179v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5170670", "genome_size_ungapped": "5170670", "gc_percent": "64.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009911795.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4932", "protein_coding_gene_count": "4488", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-22", "dateModified": "2020-01-22", "datePublished": "2020-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudarthrobacter psychrotolerans" ], "sample_taxid": [ "2697569" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.441 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5170670", "Number of Sequences": "3", "Longest Sequences (bp)": "4962517", "N50 (bp)": "4962517", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "5170", "Average Protein Length": "292.8", "Coding Ratio (%)": "87.8", "Number of rRNAs": "15", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudarthrobacter psychrotolerans", "strain": "strain=YJ56", "accession": "GCA_009911795.1", "taxid": 2697569, "species_taxid": 2697569, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1721, "total_fragments": 1722, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudarthrobacter sulfonivorans", "strain": "strain=ALL", "accession": "GCA_014712225.1", "taxid": 121292, "species_taxid": 121292, "relation_to_type": "type", "validated": true, "ani": 85.2434, "matched_fragments": 1012, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter scleromae", "strain": "strain=CGMCC 1.3601", "accession": "GCA_014644515.1", "taxid": 158897, "species_taxid": 158897, "relation_to_type": "type", "validated": true, "ani": 82.2005, "matched_fragments": 811, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter siccitolerans", "strain": "strain=4J27", "accession": "GCA_001046895.1", "taxid": 861266, "species_taxid": 861266, "relation_to_type": "type", "validated": true, "ani": 82.1191, "matched_fragments": 855, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter phenanthrenivorans", "strain": "strain=Sphe3", "accession": "GCA_000189535.1", "taxid": 361575, "species_taxid": 361575, "relation_to_type": "type", "validated": true, "ani": 81.8592, "matched_fragments": 837, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 81.836, "matched_fragments": 818, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_000022025.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 81.8353, "matched_fragments": 842, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_900104315.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 81.7522, "matched_fragments": 855, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pascens", "strain": "strain=DSM 20545", "accession": "GCA_017052465.1", "taxid": 1677, "species_taxid": 1677, "relation_to_type": "type", "validated": true, "ani": 81.5681, "matched_fragments": 808, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter globiformis", "strain": "strain=NBRC 12137", "accession": "GCA_000238915.2", "taxid": 1665, "species_taxid": 1665, "relation_to_type": "type", "validated": true, "ani": 81.4857, "matched_fragments": 818, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": 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"GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 79.2068, "matched_fragments": 350, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.8468, "matched_fragments": 343, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.3795, "matched_fragments": 419, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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"gtdb_species": "s__Pseudarthrobacter sp002427975", "ani": 89.0015, "matched_fragments": 894, "total_fragments": 1722, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.44", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.243, "cell_length": 0.17, "doubling_h": null, "growth_tmp": 28.8, "optimum_tmp": 26.8, "optimum_ph": 7.25, "genome_size": 4731532.616, "gc_content": 64.319, "coding_genes": 4335.111, "rRNA16S_genes": 4.666, "tRNA_genes": 62.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.75, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.25, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudarthrobacter", "psychrotolerans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }